Array 1 966061-967553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035915.1 Salmonella enterica strain S61394 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 966061 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 966122 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 966183 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 966244 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 966305 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 966366 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 966427 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 966488 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 966549 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 966610 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 966671 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 966732 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 966793 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 966854 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 966915 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 966976 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 967038 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 967099 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 967160 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 967221 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 967282 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 967343 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 967404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 967465 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 967526 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 983685-985649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035915.1 Salmonella enterica strain S61394 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 983685 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 983746 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 983807 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 983868 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 983929 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 983990 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 984051 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 984113 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 984174 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 984235 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 984296 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 984357 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 984418 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 984479 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 984540 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 984601 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 984662 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 984723 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 984784 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 984845 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 984906 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 984968 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 985029 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [985071] 985071 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 985132 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 985193 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 985254 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 985315 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 985376 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 985437 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 985498 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 985559 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 985620 29 96.6 0 A............................ | A [985646] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //