Array 1 37661-36472 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEB01000009.1 Lentilactobacillus kisonensis DSM 19906 = JCM 15041 strain DSM 19906 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37660 29 100.0 32 ............................. ATTGGGGATGCCAGCTAAAACTTTCGCCGAAT 37599 29 100.0 32 ............................. ACTTATAGGGAAGCAGAATGCTTTTGTACCAG 37538 29 96.6 32 ............................C CTTTGGCTTTGATAGAGTCGTCTGCCTTTTCA 37477 29 100.0 32 ............................. TTTAGGCGACCTACCATCACTGAAAGATTATC 37416 29 96.6 32 ............................C AAAGCAAAGCGACAAAACCAGCAATCATCAAA 37355 29 96.6 32 ............................C GCTAGCACTTTGGAAGCCTTGGCGTTGGAAAT 37294 29 96.6 32 ............................C TGGTATGCCGACTTGAAGTAAGCAGACCAAAA 37233 29 100.0 32 ............................. TTTGCCGCGACATTAGCGCCTGGACAGCAACG 37172 29 100.0 32 ............................. AGTCCAGCACCCTATGCTGAAAAGAAGTTAGA 37111 29 100.0 32 ............................. ATGGCAAAGCAAGAGTACACAAAGGCTCAAAA 37050 29 100.0 32 ............................. AGCCCGTTAGTAGCTCGTTTGCTTCACGATTA 36989 29 96.6 32 ............................C AACTGCGGCTGCACCAAGATGATGACATGGGC 36928 29 100.0 32 ............................. CAATGCACGGAATGTAAATCGTATTTACAAGG 36867 29 96.6 32 ............................C ATCTCGATGTCCTCTGGATCTTCCAGGATCAT 36806 29 96.6 32 ............................C GAAACTGCAAAGGCTTTGTGTCATTATTGCAA 36745 29 100.0 32 ............................. AAACGTTAACCCTCACGTACCAAGCCAATGAC 36684 29 100.0 32 ............................. CGGGCGGATGACGGCGGGGGCAGTGGAAGGTT 36623 29 100.0 32 ............................. CTTACTAAGGTTGCCACAGCAGCAAGGGCGAT 36562 29 100.0 32 ............................. GTGGCTTGTAGTGTAAAGGGAATTATTTTTGG 36501 29 89.7 0 ...........A..C......A....... | A [36478] ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTATTCCCCACGTATGTAGGGGTGATCCT # Left flank : ACGCGCATCAAATAAAACCGACAGATTGTGAGGAATTTATATGAACAAAATTTCTATTCGTGGCAGTTTGCAAACGAAACAAATCGTAGGTAGTTATTCCGATGTTGAGAAGAAAATTATAGCGGATTTGGACGCTGTTCAAAAGCAGGATGGCAAAAAGCCGTTCTCAAAGATTGCTGATGAAGTGGTCGTTGAACCATATCGAGATGGCGCGTATGCATACCACGCCTTATTGACAGAAGCGGCAAAGATGTACGACTTGTCGCCAGAGATTCAAAAAAGCGCAAATGTGAGCGAAGAATAAATTGATGTAGGTCGTGGAGAAAATTTCTGGTTAGTCTAATCACTTAATTGGGAATGAATTTCCGCGGCCTATTTATGTTGATTGATCAGTTGAAGGGATTGTGCTATTTTTTAAATGCTATCTGAGTTAAATCGAAGTTGATGAAAAATGGTTATTTGTGGATTTGAGAATGGTGTAATGGCGGGATTTGTTTAGT # Right flank : GCTATCGGTTGTTTCATATCATCATATTCAAGCGTTCCGTGACCAAAGCTGATTCTACGGACTATTATTGTTGTTTTGTAGTAACAAGGGAAGTATTATTGGGGTTTACAACAAATTGGATACTTAACTATTTTTTAAGTGAGATAGGATAAGAAAAATATTAATCCCCAAAAGTTGCCCAACAATAAATGATTCCTGCTATAATTAATGTTTAATTGTCTCTTTTTATTTTACAGAACAACGTTTTTATGATTAATAACTTTACTCTAATAATACAGGGTAAACTAAAGACATTTACACTATAATCAAAGTAAACAGTTATCCTTATTTAGAAAGTGTGTATCTCAACTTATGAACAAGAAAATCATGTCCGGGTCCTTCTGGCTGTCCTTTGGCAGTATCTTTTCACGGGTACTTGGGATTGTTTATCTAATTCCATGGCTATATATGATTGGCTCACCGGCACATAAGAGCGTTGCGATGGCGCTATTTAATGCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50115-50511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEB01000018.1 Lentilactobacillus kisonensis DSM 19906 = JCM 15041 strain DSM 19906 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50115 29 100.0 32 ............................. GGGACAGAGGGATCAGGGTACGCAGTGGAAAT 50176 29 100.0 32 ............................. TTACTCATCCAGTCTCATGGGGAAGTGCAAGA 50237 29 100.0 32 ............................. GCTCCCACCCAATACTCGATGGAGCTAGGCAT 50298 29 96.6 32 ............................C TCCGACCAGCAATATCGGTGGCGGTTCCGATG 50359 29 100.0 32 ............................. CGCTACGGCTTTAGATATTGATATCAAGAGTT 50420 29 100.0 32 ............................. TTGCGTTTCAATCTACTGCTTCATATCGTCGA GG [50437] 50483 29 82.8 0 .....G.....A.T.....A........C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCATGCGTATGGGGGTGATCCT # Left flank : TCGACGAATGACTTCCAATCAGAGGATTGTTGGTTGGAGATGCTTTTAAAACTAAGAACTGAGTTAATCCAGCCGGAGAACTGAAACTCATCAATCTAAATTTGAAAGAAGGGATGCCAGTGAATCAATAAGCCGATGTGCAAACGATAAAACAATTCACCCCTCAAATAATTAATAGTAACCCTCTTGAGAAACCCCAACGATTTCTTAACTTCATGAATTACCCCTCAATATGAAAAATTCCTCAAAGCCTCTGCGTGTTAGCGGGGGCTTTTTTGTGGGGATCGAAGGGTATGCAAAATATTGTAATACTTGTTTGATGTTTGTTTTAATAGCACCGTCAAGTTTGAACTGTTTTATTTGGGAAAGTCTGGTATCCTTAAACTAGTTGTTGGAATGATACATATTTTAGCTCGTCTTTATTTGTATGTATTTTTGAAGTTAATGAAAAACAGTTGTTTTGAAATTTCGGAATGTTGGTTTGGCGGGATTTGTTTGGT # Right flank : CGTAAAATGATCTTGATGATTAGCGAACGCTCTTTTTAACAAAATATCAAAATATCAAAATATTTAAAGTCAGCGTCCCTTAGAAGATCCTCAACTCTTTCTTTAATTATTCATGCAAATCATTCGCTTAAAGCCAACGAGGCTTTTTATTTTGTATTACTTGAACTTACTTTTAATTTGTTGCCAACAAGTTGGGTAGTAAAACATTGCCGGTATTTGGTTAATTATTGCTAATATCGCTAAAAAAACAAGTCCCAGCATGATAATCATGTTACCTAATATCATGTCAATAAAATTATGGAAAGCAAACATAAGCAGTAATAGGGCAATATATATCCACCAACTGGTAAAAAATTTGTAGCTTATGCCAATGACAAAAATTGCAATTACTAACAATGCCATGAAATCAGCTTCCCCATAGTCAAGTTATAATCTTAACTTGATTATAGTATAAATTCGGAAGTGTGACGCTTTAATTGTAGCTAATTGTTCTTCATTAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGCGTATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 8322-8900 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEB01000040.1 Lentilactobacillus kisonensis DSM 19906 = JCM 15041 strain DSM 19906 Scaffold40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8322 29 96.6 32 ............................C CAAGACGAATTCGCTAGCTTGCCAGAGCTAAG 8383 29 100.0 32 ............................. AACACCGATGCTTATTCACAGTTTTGGGGTGA 8444 29 100.0 32 ............................. TTCAACCAAATATCACAAGCTTCAGACAATAA 8505 29 96.6 32 ............................C CAGCCCTTTAAGTATAGCAAAAAGACCGTCAG 8566 29 96.6 32 ............................C AAAGAAACACAAGTTGATCGCATGACAGAACA 8627 29 100.0 33 ............................. GATTCTACCATTGCTACGGTGGTTACTGATGGA 8689 29 100.0 32 ............................. AATACTGCGTATAGTGGCCGCTTTCCTTCAAG 8750 29 96.6 32 ............................C CGAATTGGGAGTGAGGGTATGAGTACCCACGC 8811 29 100.0 32 ............................. ATGTGAATACCCTGCAAATTGCCTCATTTATC 8872 29 89.7 0 ...........G..........G.C.... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.6 32 GTATTCCCCACATGTGTAGGGGTGATCCT # Left flank : GGCAATAATGACAAAGCGATTGATGTGGTGATGTAATCGACCGAGACTATATTGGTAAGATGGGCTTTGACGATTACTTCAAGCATAGCGATGGTCACAGAATTGGGTTGGACATCCATGAAAGGCTTAATTTTGGGCCAGGGTTTGAATCGAACGTCGTTCATGAAAACTATATAATGATGGTAGAACCCGGTGTTTACCTGTCCGAAAAAGATGACGTGCGGATTGAAGATGATATATGGGTGGCTCGAGAAGGTAATGAGTGATTGACTTTAGCGTCGAGAAGCCTGCAGGTGGTTTGAAAATTAGAGTGGTTTGTTCCACGTGAAACTTTTTGAGTGATGGATTACAATTCACCATAAAATTATTAAAAAATCGTTTGTGTTAAATAAGACGTATATTATTAATTAGAGGCAAAGGTGATCAGTCTCACTTTTCAAGTTGATTGAAATTGACTGTTTAAAGATTTAGTAATGGCTCTACAGCAAGGATTTGTTAGT # Right flank : TGTTATTGTTGCTGTTATCACCGTGCGCATCGTGTATTCCCCATTTATCAATCTTCTGAGTTGTCATTGTTTGCTGAACCGCCTGTATTTTGCCAGCTGTGCTTAGAAGTTGTTGTTCAGATAAAACAGAAAAGCGTTTCTATAGTTGGAGGATAGATGAATACATATCCCCTCTTTCAGTCGATGTGAGATAATATCATTATCTAGTTAAAATGTGGTTGTTTAGGATGCTATAGATTAATTTTTGGAATATACTCACTAGCTAAAGACCAGGGCAATCATAATTCTCAATTAAGGTGGTATCAATTAAATGTGGCTAATAAAAGAGTGAACATCATTACCGTAAACCAGATCGAAACTTTCATTAATTCAAATACCAGCAATTTAGGGCAATCAGATACCGGTAAACTTCTAAAGAAATTACCTAAAAGTCTCAAACCTTTAAAGAAATTAAATAATCAAGTAGCGGCAAGGGCGATTATTCAAAATTTGTTAAAAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //