Array 1 129-2753 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQU01000060.1 Mycobacterium helveticum strain 16-83 NODE_60_length_31645_cov_44.424639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 129 36 100.0 36 .................................... ACGGCTGTGCACCTGCATTCGCAGCGCGTCCAGCTA 201 36 100.0 35 .................................... ATCCACACCTCGGCGTCGCCACCAGTCAGCAGTGG 272 36 100.0 35 .................................... CTCCAACTGGCTCACCGGGGGTGAGTACATAGTGG 343 36 100.0 35 .................................... GAGCTGTACACGTTGCGGCCGCGTTCCCACCACGC 414 36 100.0 34 .................................... TCGGTGTAGAGGAGACCGCGGTTGACGATCGAAG 484 36 100.0 35 .................................... TCGACAGACGCCCTCTTTGACATGATTGCGCGGGT 555 36 100.0 35 .................................... TCGATCCATTCTTGCGCCCAGGCGGTTATGCGGTC 626 36 100.0 37 .................................... AAGGTCAGGCGCCGGCATCGATCACAGCGCCCGGTAG 699 36 100.0 37 .................................... CGCATGGCTAAGGCTGCGCGCGGCCAGGAAACCGAAA 772 36 100.0 36 .................................... ACGCCGCCGTCGTGGGCGACGAGCACCGACATTGCC 844 36 100.0 37 .................................... ATCGAGCCGCTGCGCGATGCTGACTCGGCGTGCTGGA 917 36 100.0 35 .................................... CGGGGACACCGGGACGCCCCCAAGTGCGGCGATGG 988 36 100.0 35 .................................... TCGAAGTCGGGCGGGAGATCCCAGCGGCGCTGCGG 1059 36 100.0 36 .................................... GTGACGGCAATCCGCCTGGCCGGGGGCATCGCCGGA 1131 36 100.0 38 .................................... ACGACGAACTCGTTCACGTTCACGCTGACCTACCAGCG 1205 36 100.0 36 .................................... CGAGCTTCCGCTTGGTCGTGATCCCCTCGGCCACGC 1277 36 100.0 36 .................................... CGGAATAGATTTTACTGTTCTCTACTCGGTCATCCG 1349 36 100.0 37 .................................... CGCTTCTTCACGGCGCGGTAGGCGTCGAGGTCGGCGT 1422 36 100.0 38 .................................... TTCACGGGGCTGCTTGAGCCGCTGGAAATGGTGCTGCT 1496 36 100.0 37 .................................... TTCGCAGACGGCAGACGGGTGCTGTTCTTCGACCCAG 1569 36 100.0 35 .................................... TCCGATTCCGTTCGTTGTCAAGCCTGTCCGCAGAA 1640 36 100.0 36 .................................... CCAGGATCGGACCCATGCTGACGCGGTAGTAGTGGG 1712 36 100.0 34 .................................... CCGGCCCTCCCATCCAATAGTCGCCGATGGTGGG 1782 36 100.0 34 .................................... TTCAGCTTCCTTGCTTTTGGGGAGCCGCGCTCCT 1852 36 100.0 37 .................................... GTCAAGTTCGACACCACCGAAATGTTGCGACTGGACG 1925 36 100.0 37 .................................... GTTCAGCAAGGCTTGGATGATCGCGGGAGTGGGTCGT 1998 36 100.0 38 .................................... GCCAGCCTGACCAAAGTTTGGAACTGAGCAACTTCCCA 2072 36 100.0 37 .................................... CGTTCATATGCGCCGCCAGTCACCGGCACATACGGTC 2145 36 100.0 36 .................................... CTGTCCCCGGAAAACAGTGTGCTGGTGCTGGATTTG 2217 36 100.0 34 .................................... TTGGGGGGGTCGACGCGCTCGGCGACGTTGATGG 2287 36 100.0 37 .................................... GGGCGCCACATCCGCGAGTGGCACCGGCATGACTACA 2360 36 100.0 34 .................................... ACGCAATTGGGCTGGCCGGTCTTCCCGCTCCGGC 2430 36 100.0 35 .................................... ACGACCACGTCGGCGCCGCTGGCGGCGTCGAAGGC 2501 36 100.0 35 .................................... ACCAACCTCGTGGCGAAAGCCGTTGGCTTCCTCTA 2572 36 100.0 37 .................................... AACGGACACGCTCGTTACGGGCCCCGACCAGTCGGCG 2645 36 100.0 34 .................................... CTGGACTCATCCCATCCCCGGAACCTGTCCCCGC 2715 36 97.2 0 .....C.............................. | CC,A [2733,2737] ========== ====== ====== ====== ==================================== ====================================== ================== 37 36 99.9 36 GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Left flank : CCATGCCTGTCGAGGATCACCGTTTCGCGGGCATTCTTACGTGATGCACCGAGGGCGTTTCGCGGGCACTTCCCGTGTTGCTTGCCGGAGGGTTGCAGGAATGGTGGTGGGCGCGTGATTCTGGCTAAG # Right flank : GATTCGGACCCCAAGCGTGCTCGGTCAAGCCGATGCTGAACAGGGCCCAGCCTGGCGGAGCCGCGGTCGTCGGAGGGCATGCTCGTAGCGCTCCAAAACCAGCAGCCAACCGCAACGAACACACCCATCCTCACCAACGCACCTCGGCGGTCCGAGGCTGGGCTCACTGGACATCCGTGGTGACAAGTGGAACGCCGATAGCCCTGTCTAGTCGAATTCCGGTTTCTCGGTACGGGTCCGCTTGAGTTCGAAGAAGTACGGGTAGGACGCGAAGGTCACCGAGGCGTCCCACAGCCTGCCCGCCTCCTCGCCCCGAGGAATCTTCGAGAGCACCGGCCCGAAGAACGCCACACCGTTGACGTGGATGGTCGGCGTGCCGACGTCGTCGCCGACCGCGTCCATCCCGGCGTGGTGGCTCTTGCGCAGGGCGTCGTCGTAGGCGTCGCTGTCCGCGGCCTCGGCGAGCCCGGCCGGCAGGCCCGCGTCGGCGAGCGACGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7813-8640 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQU01000174.1 Mycobacterium helveticum strain 16-83 NODE_174_length_8717_cov_56.145949, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7813 36 100.0 35 .................................... TCGTACCGGTCGACGCGGACCCTTCCTGCTCCTTC 7884 36 100.0 36 .................................... TTGACCCCGTACATGGGACTGATACCGATCGCCACG 7956 36 100.0 36 .................................... CTGGGAGGGTCGACGCGCTCGGCGACGTTGACGGTG 8028 36 100.0 36 .................................... GTGGGGACGGCGCTGCTGCCGAACCCTCCGGTGACG 8100 36 100.0 35 .................................... CGCACTGCTGGTGGTGGCCGCTGGGTGCTGCACTG 8171 36 100.0 35 .................................... ATCCTCGAAATCCACGCCATCGGCCAATGCCACCG 8242 36 100.0 34 .................................... GGCGAGTCGGTCGCGCTCTACAAGACCGAGCCGG 8312 36 100.0 37 .................................... CTCCCCGACGCAGTCACGCCGCTGGTGGAGATCTCCC 8385 36 100.0 38 .................................... GCCCGCAAAAAGGACGACGACGATTTTCCGTCGTTTGA 8459 36 100.0 37 .................................... GGCTGCGCATTGTCCGGCGCCAACACCATTGCAGCAG 8532 36 100.0 37 .................................... AGCGCCATAACCGGATACGTGCCGGATGATCCCTCCA 8605 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 100.0 36 GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Left flank : GCGTAACGACGCGATGACCCGAAACGACGCGCGCCGGTTCTTGATCGCCTACGACATTCCTGAGGATCGTCGACGCGACCGGCTCGCAAAATGCCTTGAGCGGCACGGTGACCGCGTGCAGTACAGCGTCTTCGTCATCGACGCAAGCCCGGCACGCTTAGCGCGTCTGAAGAACGAAGTGTCCACGATCATCGTCCCATCCGAGGATTCCGTGCTGATCTGTGATCTGGGGCTCGTCCGGAGTATGGATAAGGAGCGGTACGCCTTCATCGGACGATCCCGGCCGATCATGAACAATGGCGCAATTGTCATCTGAACCGCTGCGCGAGACCCCGGTCACGACAAGAATCCCGGGGAGCGCTCGCGTGCGATCCTCCCTGTTCAGGCACTGTGCGGTGCTCGTCCGGACATCTAGCCGTAGGTAGCTCGTGGCTGGCATGTGGAGGATCTCGCGGACCTGCCACCAACCCGCTGGTCAAAGGCATAGAATTAGTTCGCCT # Right flank : CGTAATGCATCACGTCAAGATGCCCGCGAAAGTTGATCCATGCATCACGTAAGGAATGCCCGCGAAACCGGGGTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //