Array 1 27475-25465 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZR01000079.1 Escherichia coli APEC O2 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27474 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 27414 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 27354 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 27294 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 27234 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 27174 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 27114 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 27054 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 26994 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 26933 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 26873 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 26813 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 26753 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 26693 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 26633 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 26573 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 26513 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 26453 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 26393 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 26333 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 26273 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 26213 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 26153 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 26093 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 26033 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 25973 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 25913 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 25853 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 25792 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 25732 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 25672 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 25612 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 25552 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 25492 27 92.9 0 .......................C-... | T [25473] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37102-36532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZR01000079.1 Escherichia coli APEC O2 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37101 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 37041 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 36981 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 36921 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 36861 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 36801 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 36741 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 36681 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 36621 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 36561 28 85.7 0 ....................T...C.CT | C,A [36535,36538] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //