Array 1 23162-21447 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEW01000020.1 Clostridium sp. AM54-14XD AM54-14XD.Scaf20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23161 34 94.4 30 --.................................. AAAGTAACAAAGCTGTTGTACGCTAGGATA 23097 36 100.0 29 .................................... TTTATAAATTCCTCCTTTTGTTTCACTGT 23032 36 100.0 30 .................................... ATAGTCGTGTGAATAAAATTCCTTGTGTTA 22966 36 100.0 30 .................................... CAATCACCATAATTACAGTACATGTATTCT 22900 36 100.0 30 .................................... CAAACTGATGATAAATGCAAGGTGATTATA 22834 36 100.0 30 .................................... TCATCACCATAATGAACAGTTGTTTCCAAA 22768 36 100.0 30 .................................... TGTAGCAACTGTTTCTGAGCCTGTTTTTAA 22702 36 100.0 30 .................................... CGTCAACATTCATTGAAAGGATCTGGTCCA 22636 36 100.0 30 .................................... TCCGGTTGTTAGCCGGATATTCTCGCCCGC 22570 36 100.0 4 .................................... CCGC Deletion [22531] 22530 36 100.0 31 .................................... CCAGCACAGGGGATATAATTAGATTTGAAGA 22463 36 100.0 30 .................................... TTTAAGGGAGATTTAAACATGGAAGAAAGA 22397 36 100.0 30 .................................... TTCCGGATACATCCCATTCCTCTTCTGCAA 22331 36 100.0 30 .................................... ATTCCTCATTAAAAGTGTTTGCGCGTACGT 22265 36 100.0 30 .................................... TGTGATGGTGCGGGATGTTGAAGAGACAGA 22199 36 100.0 30 .................................... ATCACACACTCGTAAATTATATTCTTGATA 22133 36 100.0 30 .................................... TCTGTGATATGAATAGGCTGCTCGTCTACA 22067 36 100.0 30 .................................... TTGAATGATCCATCTAATAAGATTCCAGAA 22001 36 100.0 30 .................................... TCAGATACCTTTTTCTTTGATAAAGCCTTT 21935 36 100.0 29 .................................... TAGCGGCGTTTCAAATGAGTGGCAGCGTC 21870 36 100.0 30 .................................... ACAACAAAGTCGTATACTGGTGATGCTGAC 21804 36 100.0 30 .................................... TGCGTAATTACCTGTAAAATTCACTATGCT 21738 36 100.0 30 .................................... CACATCGGGTCTTCAATGATGTCTGCAAGT 21672 36 100.0 30 .................................... AATGTTACAAAACCATATCTGATTTTGCAA 21606 36 100.0 30 .................................... CTAAAATCCGATAAGTAATTGCCAGATTCT 21540 36 88.9 18 ...........C..................G..G.T GGAAGGACGATACACTTT TCA,T [21511,21516] Deletion [21487] 21482 36 75.0 0 ..C......C.........A.....TAA..AG...A | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 98.5 29 GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Left flank : | # Right flank : AAATAAGAAAGGAATTAATTAATGGATAATAATCAAATAACAAATAATCAGTTTAAAGGAATTATAAAGATGATTATAGCACTCATAAAAAGTGATATACCTAAGGAAGAGTTACTAGAATATTTAACTGATTTGGTTGAAGAATAATGTATATATGAGTGTAAACAAAGTGTATGTTGAAAGATATGTAAGAACATGACTATATAGATATAGCAGAATGCTATTTCCCCCCACCACAGCCTTACTTACCACATCCCCTATATGCTATTCGGATTCTGTGGTGGGGAGAGCTTTGTTCTGGTTCCTTTTTATTACATGCTAGAATGTCTTCTGCAGAAATTCTGCATGCGATTTATAGTAGCGATAGTATTCGGTACCCTTTTCCTGACCATACTTGGTTACGAAGAGGTTGTGAATTTCCCGAGGTTTGCTTTATGCGGGTATAGTTTTTTATAGAAATCATCAATGAGAGCAATACCGGCATTAGAGTAAACAATCGA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 67049-68072 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEW01000015.1 Clostridium sp. AM54-14XD AM54-14XD.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 67049 36 100.0 30 .................................... TTTTCTGAGTTAAATATTCGCCCTGATTTG 67115 36 100.0 29 .................................... TTACTGACAGTTTAGTTAAAAGTGGCTCT 67180 36 100.0 29 .................................... ATCGGTTACAGTTGCTAGCGAATCCTTGC 67245 36 100.0 30 .................................... ATGTAAATACAGAAATATCAGCAATGCTGA 67311 36 100.0 30 .................................... AAATTACAACTACGCATATAGTACAAGCAG 67377 36 100.0 30 .................................... TTGAGCCCCGCTACCTAGTGCTTTTTTTAT 67443 36 100.0 30 .................................... GGGTCTATCTTTTGTTTTGTACCTGTTACA 67509 36 100.0 31 .................................... CTGGCTACCATTTCCGAGGGGTTTTTTGATC 67576 36 100.0 29 .................................... ATCGGGAACCCAACCGATACCTGCCACTA 67641 36 100.0 30 .................................... CCTCTTGTGATCAGTATCTTTTTCATCTCT 67707 36 100.0 29 .................................... AAGATCTACAGCTTAGGTGCAGGGTATAT 67772 36 100.0 30 .................................... CAAACAAAACTATAGTTAAGATAGACGGTT 67838 36 100.0 30 .................................... TGTAACCACCGACATTTTTTGTACACCCCC 67904 36 100.0 31 .................................... CCTAAACCCGCCCGGTGCTACAATCTCAACC 67971 36 100.0 30 .................................... CCACACGCTTATTCTTACCGATACCATGCA 68037 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Left flank : AAAGTAATCCAGAAGTTATACCAAGAGATTGATAATTCTGCAAATGACTGGTTTGTTCAGGAAATGGCAGAGTTGCAAGGACAGATTGTTTCAATGATCTCACAGGCAATAGAGACCGTGCCATATGATGTTACATTCGATTTTGAACAGAATTTTCAGGGGTTGTTAAAGTTATATAATGTGCATATTGATAATGAGTGCGATTCATTATTAGAGAAGATAAGTAATTATATTAAAACTCTTCATCGGATATGTCATATATCTGTATTCATATTTGTGAATCTGAAGACCTATTTATCTGAAAATGAATTGAAAGAATTATATATAAGCTGTTTTTATGAAAAAATCCATCTGATTTTATTCGAAAATCAGCAGAAGAAATGTTTGGAATATGAAAAATGTATATTCTTGATAAAGAATATTGTATAATAGAATCAGATTAACTTACAGCATATGTCTATATGTTTAACTCGGTGAGAACCTCATTTTTACAATTTGGG # Right flank : CCGATTGCGAGATCATCATACATGAATGCAGTTTGAGAGTCTTGTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //