Array 1 133017-131072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMO010000003.1 Planktothrix agardhii 1810 1810_scaffold003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 133016 36 100.0 41 .................................... GCTTTTCTGAATCTGTACGAATCAGAGATGGGAGTAGGTAG 132939 36 100.0 40 .................................... TTGAGAGATTGACACTTGTGAGATTTGACTCACATTATAA 132863 36 100.0 35 .................................... AATAGGATAGAGGGATTAGGAGTAATCCCATTAAA 132792 36 100.0 41 .................................... AACTGGAACAAGGCGTTCCATAATGAGAAGGTCCTGTTCTT 132715 36 100.0 45 .................................... CGTATTGGTCCATTTGGAGAGTTCCAACTCTTGGAGTTCTTCCTC 132634 36 100.0 46 .................................... ATAAGTTCTATCGTTGTAACCTTTTGTCTCTTTGATGAAATTTTCA 132552 36 100.0 42 .................................... CTAAGTCGAGGTCGAGGAGTTCTTGAGCAGTTAGATTAGTCA 132474 36 100.0 41 .................................... ACAAGGTATGTCCGTGATGACATTTTCCAGCTAACTACAGC 132397 36 100.0 37 .................................... AATAATAGACTGAACTTGATCAAGGGTTGAAATTTTT 132324 36 100.0 43 .................................... TACTTGCCACTCGTAACGAGGTCTTAGTCCCTCTCCAATCCTA 132245 36 100.0 35 .................................... TTAACAACCCTTCGACGGGTTTATCTAAATCCTCC 132174 36 100.0 41 .................................... GCTTGATCTTCTTTCCTTGTTAGGTGGTCTATGTTTTCCAT 132097 36 100.0 36 .................................... ACTATCCTTGTGTTCAAATACACGCACAAAGGAATT 132025 36 100.0 35 .................................... AGAAGACTCCTTGCGACGAGGGGATGATGATTTAA 131954 36 100.0 37 .................................... TCTTAATTCTATGAATTTCATAACTTTCTCCTTTCTT 131881 36 100.0 41 .................................... TTAAAATTGCTAACCATATCTGGCTAGAGAATATTCCCTTT 131804 36 100.0 43 .................................... TACCCCTTATAAAATTTCACGGGGTGGTAGGGGGGTATATCTA 131725 36 100.0 47 .................................... ACCTTCTACTCGCACAGATGCTCCAATTCCTGAAGGGAGTTCTAACA 131642 36 100.0 42 .................................... ATAGCAGTAAGCATTTCGATGATGGATGCAGTCTGACGTTTA 131564 36 97.2 39 ...........T........................ CCTCATTGCTAAGAAAATCATAGGCTTCTGGTATGCCAT 131489 36 97.2 41 ...........T........................ GGTGTTATTCATTTTTCTAGGTGCTAGGTTGGTTTATTGCT 131412 36 100.0 43 .................................... CAAATATAGTTCAGTGGAACAATTACGGGGATTCAAGTATTAC 131333 36 100.0 36 .................................... TGTCTGTTATTTTTTGTATTTGCGCGATCTTGTCTT 131261 36 100.0 43 .................................... TAACCTAGACTTGATTAGTCGGATGTTAGCAGAAAGGTCTGAA 131182 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 131107 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 26 36 99.8 40 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATATAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTGAAAAAACAGGTGAATTTAGCGGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACTTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTACTTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 232955-231795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMO010000001.1 Planktothrix agardhii 1810 1810_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 232954 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 232881 37 100.0 40 ..................................... CTGACGATGTTGCGCCATAGTCTGAAGTTGGCTCGACAGT 232804 37 100.0 38 ..................................... CTTTGATTCAAGGAATCAATGCCCGTCACCGTCCCAAA 232729 37 100.0 44 ..................................... TTGCGGCGGATTTGATCCGCCCACTTAATCTGTTTTTCCGAGCC 232648 37 100.0 36 ..................................... CTTTTCCTAGTTCCCAAATCGCGTAACCTTTCTGCT 232575 37 100.0 37 ..................................... AATCAATTCCAGGTTTAAAAATATAAGGTATATTGCT 232501 37 100.0 39 ..................................... AAAGGTTGGTGATTTTGAATATCCTGGGACGTTTTCAAG 232425 37 100.0 41 ..................................... TTGAAGATGTAATGCCACCAGATTTGTGTGTTTTCTTTAAA 232347 37 100.0 36 ..................................... GGCAAGTAAATTGGACGGGTTGCGTAATCGTTTTTC 232274 37 100.0 35 ..................................... TCAAATTGCCCTGACGCTTTCAACAAGAACTGAAA 232202 37 100.0 36 ..................................... ATAAAACCGGGGGCGATGTTTACCGCGTGCCTACTT 232129 37 100.0 34 ..................................... TTATATGATAACGTCGGATCATGCCCAGACCCAA 232058 37 100.0 40 ..................................... ATTTTATTTTTACTTTTTTTTGGTATGAGTCTTATTTGAT 231981 37 100.0 37 ..................................... TAGGAGTTTGCAATCCATTCTCGGCTAACAATTGATT 231907 37 100.0 39 ..................................... CAACCAGCCAGCCCAAGCGATTGATATTGCTGAAGTGAA 231831 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 16 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 1333117-1335960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMO010000001.1 Planktothrix agardhii 1810 1810_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 1333117 37 91.9 174 ................TG..............C.... AAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGGACAGAGTGATCT 1333328 37 100.0 44 ..................................... GAATATTTAACATTCCAGTGGTAATCCCATAGAACTTCTTTGAT 1333409 37 100.0 35 ..................................... CAAAATCCGATCAACAATTCCCAGCCGTTCTAATA 1333481 37 100.0 37 ..................................... GTTTAATTTGTTCATGTTCTAAATAATAAGTTGGTAA 1333555 37 100.0 35 ..................................... TCAACCCGTACCCAATGAAATGTGGGTTGAGGGAT 1333627 37 100.0 38 ..................................... CTGAGTTATTAGCAATCATTAACTCATACTTTTGATGA 1333702 37 100.0 36 ..................................... ATAGCTCGGTAAGTATTTTTCGATTAGATCGTCAAC 1333775 37 100.0 38 ..................................... CTAGGAAAACCGTCTAGCATTTCTTTAAGCTGATCGTT 1333850 37 100.0 35 ..................................... TTTGATATTCCTGACTCTGAAATCTGGAAACAGAT 1333922 37 100.0 42 ..................................... CGTTAGAGTCTATCGGCGAGGAGCCTAAAGCCGTGATTTTGT 1334001 37 100.0 37 ..................................... CCACCCACACCACCCGATCTTGTTCTAGGGGAATTGT 1334075 37 100.0 37 ..................................... TAATCGTAGAAGTTCATGCGGTTGAAGTTAAAGAAGT 1334149 37 100.0 37 ..................................... TAGGTTAGCTAATGAGTTTTGTAATTGTTGTTTTTGA 1334223 37 100.0 37 ..................................... CAACTAACTGAAACAAGTTATAAGCTGTAATAGTGAT 1334297 37 100.0 39 ..................................... GTAGAAGGTTATATAGGTTACAAGTCAATCTGGCAACAA 1334373 37 100.0 37 ..................................... ATAGAAACAAGATCAACATTTTAGGGGATATTTTTAG 1334447 37 100.0 38 ..................................... AGTTACTTAATCTTGTTTCAATGTTGTTTCATCAAAAC 1334522 37 100.0 43 ..................................... TAAATATTTTATTTGCTATTGTCACAGCATCTTGAACGTTTAG 1334602 37 100.0 37 ..................................... AGCTGGCGCTGTTTGCCGCTTGCCTGCTCCGCTACGC 1334676 37 100.0 36 ..................................... CAGAGCCATTAGTTTTAATTAAATTTCTGAGAAAAT 1334749 37 100.0 35 ..................................... ATAAGAGTTTCTAACTCCTTCTAACAATTCGGAGC 1334821 37 100.0 36 ..................................... TCCGTGGCTTGGGTATCTGAGAAATTAATCTTTGAG 1334894 37 100.0 35 ..................................... TATTAGTAATAAACCTGCTATCTCTGCGGATTGCG 1334966 37 100.0 39 ..................................... TCCAGTTGTAGATAGTATTGTCAATCTTGACAATAATTT 1335042 37 100.0 36 ..................................... TTCAAGGATTAAGACAGTTAAAAATTTGGAGATTAA 1335115 37 100.0 35 ..................................... TATTTGAACTGATTATAGACGGTTTGGGGATTGAT 1335187 37 100.0 36 ..................................... AATTAGATTAGTTACCGAGTGAATCAGAAAGTAAAT 1335260 37 100.0 38 ..................................... TTTTTCGATATTTACTTCGGTTCCAATTCTTTCTATAT 1335335 37 100.0 37 ..................................... CAATAAATATTGGTAATAATAATAATAGAAATAATAT 1335409 37 100.0 36 ..................................... TTTATAAATCCATCCCAGATTATCCCAGAATCATCC 1335482 37 100.0 36 ..................................... CCGATCTTGTTCTAGGGGAAACATTAAGAAATATTA 1335555 37 100.0 36 ..................................... TTTAAAATGGCACTTATGATCAGGACTCCAGGCGAT 1335628 37 100.0 35 ..................................... GACTAGGGAGAATGTGCCCAAGGATCTCCAGATAT 1335700 37 100.0 39 ..................................... ACAAATCCATCCTAGAAATTGTTAAATACGAGATTAAAA 1335776 37 100.0 39 ..................................... ACTCAGCAACTAGCAAACACAACAACTAACAAACACAGC 1335852 37 100.0 35 ..................................... CTGAATCTAATTACGATCAGATTCCATTATTTTAA 1335924 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 37 37 99.8 41 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTCTTGTAGGGCTAATTCACAGGCGGCATAACCAATATTTCCACAGGCGGGAGCGTTTAAACCTGCTGCTTGAAAAATTGCGGTGGTCAGGGCGGTGGTTGTGGTTTTTCCGTTAGTTCCAGTAATACAAACCCAGGGCAAATGTCGCAGATTTCGCCAGGCTAATTCTAGTTCTCCGATGGTTTCTATACCTAAATTTCTGGCAGCTTTTAACCCCGGACTATCCCAAGGAACCCCAGGACTCACAACTATTAAATCTAGGGAAATATCGGGTTGAAAATTATGCCCTAACTCGACTTTAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGTAAGAATTGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTCAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATAT # Right flank : GTCTGCCGTCTGAAACCCTTATGGGGCGGTCATTATGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATTAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAGGGTTTTTCGTGAACCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA //