Array 1 1-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVC01000026.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00025.25_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 1 26 100.0 40 .......................... TACATATGGTAGGGACTCATTTAACTTCAGGAGCTTAGTT 67 26 100.0 41 .......................... TCTGTAAATAAATGTGTTATACTCTGGATAATAAGTTTGTT 134 26 92.3 0 .......................TT. | ========== ====== ====== ====== ========================== ========================================= ================== 3 26 97.4 41 TAACAATAACATGAGATGTATTTAAA # Left flank : | # Right flank : AAGCAATTGAGAGTTGAAAATTGAGAATTGAGAGTGAATGAAGATTTCAGCTTTTTCATAGGAAAAGGCTTACTTGTTATGTCTTATTTGTTAAGTATTGTACTTTGATTTTTCCAAGTGAATTGCAAAGTGAAAGTGGATTACAGTTAATGATACCAGTGGTTTGCATAGGGTTTTCTATGAAAAATTGTATTTTATAAAATCATCTGGTAAATATTTTGACAAACCTTGAGTTTGCAATGTTATATGATATTGTTAATTTTGAGGAATGTTGATTTTACGGTGGTTAAACCTTAACATAAGATGTATTTAAATGCACCTTTAAATCTTCCCTTTTTAATTTTAATTAGTTAAACCTTAACATAAGATGTATTTAAATAAGGCTTGAAACTATAGGAAACAATTTTAAAAAAGTTAAACCTTAACATAAGATGTATTTAAATTGATCTGCTTTAGTATTAAATAAAACAGCCTTAATTGTTAAACCTTAACATAAGATG # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACAATAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 444-798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVC01000026.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00025.25_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 444 30 100.0 34 .............................. GCACCTTTAAATCTTCCCTTTTTAATTTTAATTA 508 30 100.0 34 .............................. AAGGCTTGAAACTATAGGAAACAATTTTAAAAAA 572 30 100.0 36 .............................. TGATCTGCTTTAGTATTAAATAAAACAGCCTTAATT 638 30 100.0 36 .............................. AAAGATGAAGTTTAAATTTATGCCACGTGTAAGTGA 704 30 96.7 34 ................G............. ATTATAAAGTAGTTAGATGTGGTTTTGAAACCAT 768 30 80.0 0 ..G....T.......GG.........G..G | T [791] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.1 35 GTTAAACCTTAACATAAGATGTATTTAAAT # Left flank : TAACAATAACATGAGATGTATTTAAATACATATGGTAGGGACTCATTTAACTTCAGGAGCTTAGTTTAACAATAACATGAGATGTATTTAAATCTGTAAATAAATGTGTTATACTCTGGATAATAAGTTTGTTTAACAATAACATGAGATGTATTTTTAAGCAATTGAGAGTTGAAAATTGAGAATTGAGAGTGAATGAAGATTTCAGCTTTTTCATAGGAAAAGGCTTACTTGTTATGTCTTATTTGTTAAGTATTGTACTTTGATTTTTCCAAGTGAATTGCAAAGTGAAAGTGGATTACAGTTAATGATACCAGTGGTTTGCATAGGGTTTTCTATGAAAAATTGTATTTTATAAAATCATCTGGTAAATATTTTGACAAACCTTGAGTTTGCAATGTTATATGATATTGTTAATTTTGAGGAATGTTGATTTTACGGTGG # Right flank : GCAATTGAAAGTTGAGAATGAAGAGTTGAGAGTGAATAAAGATTTTATTAAGAAGTCTGCTACTTTTTATAAACAGAGTTCTTGGCTTCAGAAGGAGTTTTTATTCCCACTGAAGCTTTATTAACAGGATTCTTAGGAGTTTTACTCCTTAGAAGTCGTTATCCTTTAGGAGAAATCGTTATCCAGGGACGTAGCCACTCTTTACTCCCACTTTAAAGAAAAGCAGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCACAGAGTGCGATGGGAGTATTAGAGCGCGTAGTCATCGGATAAATGGCAGATTATTAATTTTACCAAGTCAATTGCAAAATAAAAGTAGCTTAAAGTTAATGATGCCAGTGGTTTGTATAGTGTTTTCTATGAGAAATTGTATTTTATAAAGTCACCTGGTAAATTTTCAAACAAAACTTGAGTTTCCAATGGTTATGTGCTATTGTTAATTTTAAGGAATGTTGATTTTACAGTGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 11872-12099 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211044.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11872 30 100.0 35 .............................. GGCACAGCAGTATTAAAAGGAATATTGGCGGTAGA 11937 30 100.0 36 .............................. AAGTTAAACTTAATTTTTCTTTCAATTATGTTAACT 12003 30 93.3 37 ........A...................T. AGGATAATGTCCCCTTTCGAAATTTTGCAAATTCCTT 12070 30 86.7 0 ...T....A......A..........G... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCAGAAGGAGTTTTTACTCCCACTGAAGCTTTATTAACAGAATTCTTAGAAGTCGTTATCCTTTAGGAGAAATCGTTATCCAGGGACGTAGCCGCTCTTTACTCCAACTTTAAAGAAAAGCAGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCACAGAGTGCGATGGGAGTATTAGAGCGGGTAGTCATCGGATAAATGGCAGTATTATTACTTTTCCCAAGTGAATTGTAAAATGAAAGTGGATTAAAGTTAATGATACCAGTGGATTGCATGGTGTTTTTTATGAAAAATTGTATTTTATAAAATCATCTGGTAAATATTTTGACAAACCTTGAGTTTGCAATGGTTATATGCTATTGTTAGTTTTAAGGAATGCTGATTTTACAG # Right flank : TAAGTATCTGTCTGTACATGTGTATTTGCTAATGGGAATGAAGAGTTGAGAGTGAATAAAAATTTTACTAAGGAGTCTGCTATTTTTTATAAGTAGCAGATTATTAATTTTTCCAAGTGAATTGCAAAATAAAGGTGGACTAAGGTCAATGATGCCAGTGGTCTGCATAGCATTTTCTATAGAGAATTGTATTTTGCAACATTACCTGGTAAAGTTTTAAACAAACCTTGAGTTTTCAATGGTTTTATGCTATTGTTCACTTTAAGTGATGTTGGTTTTACAGTGATTGAACTTTAACATAGGATGTATTTAAATTTTCTTAATGCATTGACTAAACTTCTAGCACTATTGTTGAACCTTAACATGAGATGTTTTTTCAAAAAATTGAAAGTTGAGAATGGAGAGCTGAGAGTGAATAAAAATTTTAGCTTATTCATAGATTAGGGATTTTACTGTATCAATATTAGTAACTTTCCCAAGTGAGTTACAAATTGAAAGTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 23814-24169 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211044.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 23814 30 93.3 36 .......AG..................... GCACAAACCCATTTTTCACCTTCCTTTATTTCTTGC 23880 30 100.0 34 .............................. CGCCATCTTACTGTTTTACCGGATTCTTCTTGCT 23944 30 100.0 35 .............................. ATATTTAGGTTGTTTATATAAGAAATTATAGCGTT 24009 30 100.0 36 .............................. TTTACATTTTTGAAATCACTATAATTTTCTAAATTT 24075 30 100.0 35 .............................. AAATTAATTGCTCTATCTGAATCTAGTGCGATTAT 24140 30 83.3 0 ...............AG.........TC.A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.1 35 GTTGAACTTTAACATGAGATGTATTTAAAT # Left flank : TCTAATCTAGCAGGTTGAACCTTAACATAGGATGTATTTAAATGCTGTAAAGTTATAGAATATAATTACTCTATCTTCGTTGAACAATAACATGAGATGTACTTTATATAATAAATAGTAGATAATAAATGAGGAGAAATTTTCTCCATTTACATTGTGAAAAATTTTAAAATTAAGATTCTCTGTATAGCAGCGGGAGAAAATCCTCTATAGTTATTTTTTATTAATTTAGAAAAATAATAAAGTAACCCAGAATGATAGGGTTTTAGAAAAGCTTAGGAATATATATGAAATTCTATTTTTAGCAATTATTTTATATTAATTTTCCCAAATGAATTGAAAAGTGAAGGTGGTTTAAAGTTAATGATACCAGTGGCTTTGGCAGGATTTTCTATATAAGTTTCTATTTTACAAAATCACCTGGTAAACTTTTAAGCAAACCTTGAGTTTCCAATGGTTATATGCTATTGTTGATTTTAAGGAATGTTGATTTTGCAGTG # Right flank : AGCAATTGAAAATTGAGAATGGGGAGTTGAGAGTGAATAAAAACTTTACTAAGGAGTCTGCTATTTTTTATAAACAGAGTTCTTGGCTTCAGAAGGAGTTTTTACTCCCACTGAAGCTTTATTAACAGGATTCTTAGGAGTTTTACTCCTTAGAAGTCGTTATCCTTTAGGAAAAATCGTTATCCAGGGACGTAGCCGCTCTTTATTCCCACTTTAAAGAAAAGCGGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCGTAGAGTGCGATGGGAGTATTAGAGCGGGTAGTCATCGGATAAATGGTAGATTATTAATTTTCCCAAGTAAATTGCAAAATAAAAGTGGGATAAAGTTAATGATACCAGTGGCTTGTATAGGGTTTTCTATGAGGAATTGTATTTTATAAAGCCACCTGGTAAATTTTCTAACAAACCTTGAGATTCCAATGGTTATGTGCTATTGTTAATTTTAAGGAATGCTGATTTTACAGTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 24668-24892 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211044.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 24668 30 100.0 35 .............................. AATAAGACAGTTGCTAGAAATAAGTAAGAGTGAAG 24733 30 100.0 34 .............................. ATACGATTATAATATTTTATATGGAAAACATTTT 24797 30 100.0 36 .............................. CAAAGCTCTGAATATCTACTTATATCACTCTCAATA 24863 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 GTTTAACAATAACATGAGATGTATTTAAAT # Left flank : AAGCAATTGAAAATTGAGAATGGGGAGTTGAGAGTGAATAAAAACTTTACTAAGGAGTCTGCTATTTTTTATAAACAGAGTTCTTGGCTTCAGAAGGAGTTTTTACTCCCACTGAAGCTTTATTAACAGGATTCTTAGGAGTTTTACTCCTTAGAAGTCGTTATCCTTTAGGAAAAATCGTTATCCAGGGACGTAGCCGCTCTTTATTCCCACTTTAAAGAAAAGCGGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCGTAGAGTGCGATGGGAGTATTAGAGCGGGTAGTCATCGGATAAATGGTAGATTATTAATTTTCCCAAGTAAATTGCAAAATAAAAGTGGGATAAAGTTAATGATACCAGTGGCTTGTATAGGGTTTTCTATGAGGAATTGTATTTTATAAAGCCACCTGGTAAATTTTCTAACAAACCTTGAGATTCCAATGGTTATGTGCTATTGTTAATTTTAAGGAATGCTGATTTTACAGTG # Right flank : GAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //