Array 1 240603-239552 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483358.1 Actinobacillus pleuropneumoniae strain NCTC11384 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240602 28 100.0 32 ............................ ATAATATCGGCGATACTGTCTTGTTCGCTGTT 240542 28 100.0 32 ............................ GTTTTTGTCCTTGTATCGCACTAAATACTTAA 240482 28 100.0 33 ............................ ATTGTCATCGAGTCTTAATACGCGCATTTGCTC 240421 28 100.0 32 ............................ ATACCGATAAAATAAAACGGAATTTCTCGTAA 240361 28 100.0 32 ............................ TAGCACGTTCGCGAAGCCTGCGTATGCTACCT 240301 28 100.0 32 ............................ AAATAGATCGCTTGTATAAGCGAGCTATATTC 240241 28 100.0 32 ............................ TCTATGAAGAGTTGGAAAATAGAGGGGTCGGG 240181 28 100.0 32 ............................ TTAAAACATGGACTACTATACTAAACTCATAT 240121 28 100.0 32 ............................ AGTTAAGGACGAGATGACGACTTAACTATAAC 240061 28 100.0 32 ............................ GAATTTATGAAACTAGCGAAACAGCTAAATGA 240001 28 100.0 33 ............................ CTTTGGAAAAGGAACAGGATCAGGGGGCGAACT 239940 28 100.0 33 ............................ CTGAACCACCGGAAGGAATACTACAATTAGAAA 239879 28 100.0 33 ............................ CTTGAGAAGCAAATAAAGTGATCAGTTTATCAT 239818 28 100.0 32 ............................ TTATCAGGAATATTCTGCCGCTTATGAGATAC 239758 28 100.0 32 ............................ ATTTTTTTATGTTTGCCTGATTTCATTATCGT 239698 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 239638 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 239578 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACATCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //