Array 1 217862-215758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFM010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 50821 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217861 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 217800 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 217739 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 217678 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 217617 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 217556 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 217495 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 217434 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 217373 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 217312 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 217251 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 217190 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 217129 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 217068 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 217007 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 216946 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 216885 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 216824 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 216763 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 216702 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 216641 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 216580 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 216519 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 216458 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 216397 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 216336 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 216275 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 216214 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 216153 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 216092 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 216031 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 215970 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 215909 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 215848 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 215787 29 100.0 0 ............................. | A [215760] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236391-234533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYFM010000005.1 Salmonella enterica subsp. enterica serovar Jerusalem strain 50821 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236390 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 236329 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 236268 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 236207 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 236146 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 236085 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 236024 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 235963 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 235902 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 235841 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 235780 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 235719 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 235658 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 235597 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 235536 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 235475 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 235414 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 235353 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 235292 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 235231 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 235170 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 235109 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 235048 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 234987 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 234926 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 234865 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 234804 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 234743 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 234682 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 234621 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 234560 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //