Array 1 69021-68341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLH010000004.1 Akkermansia muciniphila isolate MGYG-HGUT-02453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 69020 31 100.0 34 ............................... CGTCCGCCGCCTGGGCCACCTGGCCGTTTGCCAG 68955 31 100.0 34 ............................... GGAATCCGGCTACCTTCGCGCCTTGGAAATCAAA 68890 31 100.0 34 ............................... AACATCTTTCGGGCTGAACCATTCCCTCTTTTCT 68825 31 100.0 34 ............................... CACTAATTTGCACTGCGGGCGGCCCTTGGCGTCA 68760 31 100.0 35 ............................... CGTCCAATAAGCGATAAATCCCGGATGTTTCACCC 68694 31 100.0 33 ............................... TTCTTTTCGCTATCCCATTCTCCGAGATCGTGC 68630 31 100.0 34 ............................... CGCGCAAGGCGTCTTTGATTGCCAGCAGGTTAGA 68565 31 100.0 34 ............................... TGGCCGCAAAACTCGGAGTTGTCCCCCCAGCCTC 68500 31 100.0 34 ............................... TCCACCAGGAGGACGCACCGGAAGCCTTGATGCC 68435 31 100.0 33 ............................... GAGATGGTAGGGCCCGTGCTTCAGGCGATGGGG 68371 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.1 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCAGACGTCTCTACCAGGAGATGGATTGGACGCTGCTGGACGATTTAGCACCGGAGGATGTGACGATTGGCCGGGAGGTTCTGGCCAGGGTTCCGGCGACCTTGTGCCGGATTGAAGAACCGTGGCGGCAGCGTTCCCCTTGGAGTGAGTGGACGGCTTGGTGTTGGCCCAGTCGCACGGTGACTGCCGAGAGCTATGCGGCCAGATTTGCGATGGTGACCACCGGCAGCCCCAGGCTGGATTCCCAGCCCTCCAGCGAGAGAGCCAGGGTGATGCACCTGCTGGCCGATGCCAGGGAGCGGATGATCCGGGAGGGGAGAGTGGCCAGGGAGGACGACGAGGCGGTGGATTGGAGGGGCTTGCTGGCCGCCTGCAAGGGAGATGCAACGGCGTTGCTATGACGATGCAGCGGGGAGGCATTTAAGGTCGTTTTTCCACGATGCTTGATAAATTTTCCACGATGCACTGCGACGTTACACAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 594011-594760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLH010000015.1 Akkermansia muciniphila isolate MGYG-HGUT-02453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 594011 31 100.0 34 ............................... AACAATACGTACCTTTTCGCAAGCCTTACATTTT 594076 31 100.0 34 ............................... TATGGGGTTATAGTCAATCATTTTCTTAGTTGTT 594141 31 100.0 35 ............................... CCCAAAATGGCCGTTTTGGCTCTGGATAGGGTAAA 594207 31 100.0 33 ............................... ATCATGGTGAATAGTAAGCAGGGCAAGGAACCC 594271 31 100.0 34 ............................... TCCTTGTCACGTCCCACAAAAGAGAGACAAGAAT 594336 31 100.0 33 ............................... CAAAATGTCAACCTTTCTCCTTGTCACGTCCCA 594400 31 100.0 35 ............................... ATGCATTAATGACGTACAGCACAAAATTATCAATG 594466 31 100.0 35 ............................... GCTGGAAAACCACACGTCCGGACGAACTCAACAAA 594532 31 100.0 36 ............................... TTAACTGGTAGTTGCATTTATAGCATGCAAAGAAAT 594599 31 100.0 34 ............................... GGAGCCAGTGTGTCCCCGGCTGCGTTGAAGAGTG 594664 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 594729 31 83.9 0 ....T................A..A....TA | G [594742] ========== ====== ====== ====== =============================== ==================================== ================== 12 31 98.7 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 794627-795695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLH010000015.1 Akkermansia muciniphila isolate MGYG-HGUT-02453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 794627 31 100.0 34 ............................... ATAGTGTTCTTTTCCGTTTGTGTTTATTTCCACG 794692 31 100.0 34 ............................... GACCACCTTGACCATCTTCCTCAAACCCCCACAG 794757 31 100.0 34 ............................... TCCGGCAGGCATAAACTCGCCCTAGCCAGAGAAA 794822 31 100.0 34 ............................... CACCATGGCGGGCAACTACGTTTTCAACTACTTC 794887 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 794952 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 795017 31 100.0 33 ............................... ATAAGGAGCCTGGCGGTCCTCTTCCCCCAGCTT 795081 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 795146 31 100.0 33 ............................... GCGGAAGTCTTAGAAACAGTCATGTACTGGCTG 795210 31 100.0 34 ............................... TTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCC 795275 31 100.0 33 ............................... AGAGTATTTTTGCCAGAGCCGATCAGCTCTGGT 795339 31 100.0 33 ............................... CTTCGGCAACCCCTTGGCCGCCGTAGAAAGGTC 795403 31 100.0 33 ............................... TTGCTATTTGAAAATGGACGATACAGTAAAAGA 795467 31 100.0 35 ............................... ATTATACAATCTGTCTCATAATTGCAACGTCCACA 795533 31 100.0 35 ............................... AATTTGGCGAGGATCAGCCGGGCCGCGGCGCTTCC 795599 31 100.0 34 ............................... CGCCTTTGTGGGCAACATCGACATGATTGCGGAG 795664 31 87.1 0 .........................C.CC.A | G [795689] ========== ====== ====== ====== =============================== =================================== ================== 17 31 99.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : AGGGACACGTTTTGGAAGGTTGTCACACCTGTATGGAAATGTAGATGTGAACATCAAACGCCAGCCTTACTGAATGGCCTTTCATTAAGTTAGGTTGCTGAGTGGAGAATGGACTTGGTGCCGAATTTCTTGGAGTAATAAAGAAAAATAATAGTAGAGCTTGTATCTTTTAAAAGGGGAATTTGTGATATAAATAAACCTTCTCTCCAAGAAGAATTTGTTGTTGAAGTATGGCAACAGGATGTTAGGTTTCCATAGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAACTGGAAACAATTTATGAAATTATAAATGATTCAGCCGTGGCTTATAAAGACAGGATTCCTGCCGACAGATGGAAGGAACCTTACATGCCCATGAATGAATTAAAGGAGCAGATCAGGGATGGTGTGGTGTTCTATTGTTTTGAAGATAAGGGACGCCTTCTTGGCGTCATGGGGATTCAGGACCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 804817-805183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLH010000015.1 Akkermansia muciniphila isolate MGYG-HGUT-02453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 804817 33 100.0 34 ................................. CTCCTCCGGCAAAACGGGGAACAGGCAGATGCCG 804884 33 100.0 34 ................................. TTCCGGGTTGCTAAAAAGTTTGGCATTGCACCTT 804951 33 100.0 33 ................................. GGTGCTGTAGCGCAGTGTCCTAATATCGGTCAG 805017 33 100.0 34 ................................. CGTTGGCCGCCGGAGCACCAATTAATACCGCCGC 805084 33 100.0 34 ................................. ATCTACAAACCCGTAGGCAATGGCTTCCGCGGCG 805151 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTTGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //