Array 1 163330-160799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPG01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163329 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163268 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163207 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163146 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163085 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163024 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162963 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162902 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162841 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162780 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162719 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162658 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162597 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162536 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162475 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162414 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162353 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162292 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162231 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162170 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162109 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162048 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161987 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161926 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161865 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161804 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161743 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161682 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161621 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161560 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161499 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161438 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161377 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161316 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161255 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161194 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161133 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161072 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161011 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160950 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160889 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160828 29 93.1 0 A...........T................ | A [160801] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181452-179837 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPG01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181451 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181390 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181329 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181268 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181207 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181146 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181085 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181024 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180963 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180902 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180841 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180780 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180719 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180658 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180597 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180536 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180475 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180414 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180353 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180291 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180230 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180169 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180108 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180047 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179986 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179925 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179864 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //