Array 1 357-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOZF01000005.1 Serratia oryzae strain S32 NODE_5_length_191618_cov_169.996115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 356 28 100.0 32 ............................ AGCCATCGTCCTTACCGGTCATCAACTCATAA 296 28 100.0 32 ............................ TCGCTGGTTCCGGTTGAGCAATGGTCAGCAAG 236 28 100.0 32 ............................ TGGCAACATCCGTGTGAATGGTATCCGCTACC 176 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCGCTCAGCGCATTAGATGCGCAACCCTGGCGTAAAGGGCTGCGTGATAATACTGAGCACAGCGGCATTTTACCGGTGCCGGAGAAAGTGAAATACCGCACCGTGCGGCGCGTGCAGCCGAAGAGCAACGCGGAACGTCTGCGCCGCCGTTCGGTGAGCAAGGGGTGGCTGACGGAAGAAGAGGCGCGTCTGCGTATTCCTGATTCAGTAGAAAAACGCACATCTCTGCCCTTTATTCGGCTGAAGAGTTTATCCAGCGATCAAACCTTTCTATTGTTTATCGAGCAGGGGCCGATTGGCGATAGCGCAACCGAAGGAGCATTCAGCGCATATGGTTTAAGCGCAGTAGCGACCATCCCGTGGTTTTGACCCTAATTTTACGGCCGATCCTAACTTATTGATTTAATAGGTTAGGATTGGCTGCTTGTGAAAAAGGGTTTTTTAACAGGTTTGCCTGTTGTTGTTTAGCTAACAGTAGGTTAGAAACGATCTGCAACA # Right flank : AGTTCGGGAGATCTGTCCGAATGGGTGTAAGCGCCCTTAAATCAGCATCTATTTTTTAGCCATTGACTGCGCAACACTGCCTCTGCATTCATTTACTACAGAGGTGATATGATGAAATCACAACAACGTGCTGATTTTTGGCGTGAACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87771-84740 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOZF01000025.1 Serratia oryzae strain S32 NODE_25_length_87906_cov_160.984245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87770 28 100.0 33 ............................ CCCTCATCGATACCGGTGCACGGATTGAAGACC 87709 28 100.0 32 ............................ TGTATAGGTACGGGCGATCGGGTCATAGGTGG 87649 28 100.0 32 ............................ ACTGTCGATCGTATGCGTGCAGAAGCGGCAAA 87589 28 100.0 32 ............................ GTCACTAAACTTCGGATGTAATCACTATGCCT 87529 28 100.0 32 ............................ TGATGCGTCCGGCAACAACCGCAAGCCAAGCA 87469 28 100.0 32 ............................ CATATGTACGGCCAGCTTAGCCAGCGCGTGCC 87409 28 100.0 32 ............................ AAGAAATTTACCGAAGGCACCAAGAAATCTGG 87349 28 100.0 32 ............................ ATTTTGTGCCAGCCTCAAGGGAGGCGGAAAAC 87289 28 100.0 32 ............................ AACTTGGCCGATACCAAAATCCCCAAGATTTA 87229 28 100.0 32 ............................ CAGCCTATCGTTTTTGCCGGATCTGCATTCCA 87169 28 100.0 32 ............................ AAAATCCCCAAGATTTAAATTACCGGAATGCC 87109 28 100.0 32 ............................ TCATTCGTAACACCAATAATTTCTCGCAGCTT 87049 28 100.0 32 ............................ TATCAGGCTTACGCGGTGGGCAACAGATACCC 86989 28 100.0 32 ............................ GCATGGAGTGCGCAAAGTAGCCGTGGCCATGC 86929 28 100.0 32 ............................ AGCCAGTGTTCTGGTGTTCGGTGCAGTAGCCA 86869 28 96.4 32 .............A.............. AATAGCCCGTGATGGCACTGGAGCAGGCACCA 86809 28 100.0 32 ............................ GATCTGCGCGGGCAACTCATCCCAACGCGGCA 86749 28 100.0 32 ............................ ACGGGCAGGAATTCCCGTTCATCGGCTTTAAC 86689 28 100.0 32 ............................ CTTGCCCAAACTCGGGTAGGCGGTGATACGCC 86629 28 100.0 32 ............................ TACTGCTATCTGCTAGACAAAATGTTTAACCA 86569 28 100.0 32 ............................ CAGGGATGACTCGACTATTTTTGTTGCAGCCT 86509 28 100.0 32 ............................ TCCAAGGTCTGAACTATCCAAGTAGCGGCCGC 86449 28 100.0 33 ............................ CTAGCAGAGTTCGGCAGCAAAAGAACCGCCGAC 86388 28 100.0 32 ............................ TGTGCGCGTCAATGTCAGCGTTTAACGCAGTG 86328 28 100.0 32 ............................ TTCATGCTATGAGCTTGAGTAGTGACAAAAAG 86268 28 100.0 32 ............................ AGCTGCAGCAACATCGCCCGCCTAACCCATTG 86208 28 100.0 32 ............................ GGCTAACGCCTGGCACTCGAAAGCACCTCTCT 86148 28 100.0 32 ............................ ACGTAACCGGCTCGGCTGTCTTTGCTGCTAGA 86088 28 100.0 32 ............................ GTGAATTACTGCTATGAATCTCGTCATACAGG 86028 28 100.0 32 ............................ AGCGTGCCGATCTCCACATCACTGACGTTCTG 85968 28 100.0 32 ............................ TAGTCCCGCTCTTTCATTGCGCCAACGTCTAC 85908 28 100.0 32 ............................ ACACTCTCAAGCCGATACGCCGGCAGCGTCAT 85848 28 100.0 32 ............................ CGAGAAATATCTATGTGTTGAGTCATTTACAC 85788 28 100.0 32 ............................ GATCAGAATAAGCGGCCATTAATCTGGGTCGA 85728 28 100.0 32 ............................ TTGAGCAATGCTGTTTACCGGACCGCCAAAAG 85668 28 100.0 32 ............................ AAGGAGTTGCGTCGGTATCCGGCGTGTCTGAG 85608 28 100.0 32 ............................ TGATAAATCGTCTGGTACCGTTGAAAAAAGAA 85548 28 100.0 32 ............................ AACAACCTGGGCGCAGTATCGCGCCGACATTG 85488 28 96.4 32 ................A........... GCTGAGCTGGCCGGTAATGTCGATCCCATCCA 85428 28 100.0 32 ............................ TCTCTTACCAGTCGTCAACGATGGGCTTTACT 85368 28 100.0 32 ............................ TGCAATCCCCAGCGCGGAGGCCAAACCGATAA 85308 28 100.0 32 ............................ AGGGCGTCAGGGCGGTTTGGTGACGGAACTCC 85248 28 100.0 33 ............................ CGCGTGGCTTGAGCGTTAGCTTTGCCTCGATTC 85187 28 100.0 32 ............................ TGACTATCACACCGAAGCCTATCGCACTGAGT 85127 28 100.0 32 ............................ AGGTCAAAATCTTCTACCTGCTGGAGCAGCGC 85067 28 100.0 32 ............................ GAGAACATGGGGCATCTAACGGCTGGGCAATA 85007 28 100.0 32 ............................ AGATAGTCACGCTCTGTCAGCAACCGGGCATC 84947 28 100.0 32 ............................ TCTACATGCAGGACGCTGCGCAGCTTCTGGTC 84887 28 100.0 32 ............................ CAGGCAGGAGGCGTTATTGGCTGCGGCTCAGG 84827 28 100.0 32 ............................ TGGGCGTGATGGCCACCGCCCCGACGTCGTTC 84767 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGAAGCGGATACGGTGGAAAAAATTGAGGCGTTGTTACCGTGGAATGTTGACCTTGCCCCTTTTTCAAAAAATGTGCCGCAATATGAATAGGGCAAGTACGTCGATTTAACGGCGGTTACGAATGGGTAAACCA # Right flank : ACGCTGTAGAAGTTATCTAAATGGCCGCAAAAGTTCACTACCGTATAAAATCACTGTGGTGCACATCGGTAATTTCACGTGTGGTTTCAAAATAAGGTAAGTTTTTATTATTGGCGGCAATGTTTAATTTTTCATTTTGCTTATTATTTAGACAAAAACATCCCGTCGGAAATAATGGTTTTGACGAAAAATATTTTCGCTAAAATAAAGGTATGCGCTAGCGTGACAATGCTCAACGAACATGCCGCGCTGGCCGTTTATTTTTACGAAATATATTTTTTCGCTCTTATTCGTACATGGAAAATCGCCAAGTGAGCTTTACCTTAAATAAAGGAAAAGTGATGCCGCCGCCGTTAGGCGCAAGAAATCAGCATTGACACCGCGCGTTCTGTAATACGCAATAAGAACCTAAAGGAGGAAGTTATCTGAAGTTAAAGAAGGCAAAGCTAAAGCAACTGCGGTGCGCCATCATCATATGCGTGGTCCGTCGGATATGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //