Array 1 40839-40507 **** Predicted by CRISPRDetect 2.4 *** >NC_017766.1 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40838 29 100.0 32 ............................. ACAAGAAGCGCATCAACAAGGCCGCCAAGAAG 40777 29 100.0 32 ............................. ATGACCACGACCATCCACGCCCCCGCAACCCG 40716 29 100.0 32 ............................. GCCGCAGCCTCCACCCTCGTCTTCGAGGCACT 40655 29 100.0 32 ............................. GAGGTCATCGCGGCCGGTGAGCCCGCCACGTG 40594 27 89.7 32 ............--.....A......... GCCCCGGCCAGTCGGCTCGGGGTGTGGTGGGT 40535 29 72.4 0 ............G.C.......GCACA.G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGACCGTGGCCAACATCTGCCCTCGGGCAGGAACTACAGCAGCCTCAATGAGTTCACCGGCGAGGCGGTGCTCTGGTGACCGTGATCGTTCTGACGAACTGCCCAGCCGGTTTGAGAGGGTTCCTCACCCGCTGGATGCTTGAGATTTCAGCCGGCGTCTTCATCGGCAACCCGAGCACCCGCATCCGAGATGTCCTGTGGAGCGAGGTGCAGCAATACACGGATCAAGGCAGGGCCCTCCTAGTACACACCACCAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCATGGAAGCCGGTGGACCACGAGGGACTCACCTTGATCCAACGACCGAAGACCAATCCGCCACCGGCACCGGCCAAGGCGGGTTGGAGCACAGCCTCAAAGAGGCGTCGATTCGGCAAGCGTTAGCCCATATGCGCAGTACGCCGGAATAATTGAAAGTCATAGAAACACAGACTTCCAAGCGCCATACCCGCAGGCCATCGAGT # Right flank : AGTCGGGCTGTACGCCGAAGGGCTCAAGGAGGTGTACTTCCAGGACAGCGGCCGCCGCGCCGGCCAACTGGAGGAAGTCCGCTTCACCGACATCGAGCACCTCGAGTTCGACCTGTAGCAACCGCGCCCCGAACAGCCTGCGAGCCCGGACCAGTTGGTCCGGGCTCGCTCGCGTATCCGCGGGGGGTCGGATTGATGCACGCGATGCCCTGTTCAACGCCGTCCCGGCGCCGCCGGTTACGGTTCGCCGAAGCCGTGCTCGAAGCCCTTGAGGACGGGGTCAAGCTCGGCAGCCGCGCCGCACAGCGAGCACAGCCGCAAGCCCGGCTGCTCTGCTACGTCCAACGCCCGCTCCAGCGGCAGCACCGGCGCCCCGGCCGACGCCTCTTCGCAGTCGACGGCGTGCACGACACCGCGCCGGCCGGGACCACGGCCGCCGGCCTTCGCCAGCATCCAGCCGGACGGCCGCCGTGGCCCCAGCGCCTCCTGGACGGGCGAGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50725-53191 **** Predicted by CRISPRDetect 2.4 *** >NC_017766.1 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 50725 29 100.0 32 ............................. CGCCTGGTTAGCGTCGACGTTACTTTCGAGGT 50786 29 100.0 32 ............................. CGGTGCTAGAGCCGCCCCCACTACCCACTACC 50847 29 100.0 32 ............................. TGTTGCAGGCGACGGCGCAGGAGATCGTGGCT 50908 29 100.0 32 ............................. GTCACACAGGTGATCAGGACCGTCTTCCTCGC 50969 29 100.0 32 ............................. AGCATCGATCGCAAGCCGTGCTCGAAGCGCCG 51030 29 100.0 32 ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGG 51091 29 100.0 32 ............................. CAGCTCGGCGCGCAGGAACGGTCCGGGCTGCG 51152 29 100.0 32 ............................. CAGTCCAGGCCGTCCTTGATGTGACCGACCGT 51213 29 100.0 32 ............................. GAGGTGAGGCTCGTCGGCCAGGGCGCCGGCAA 51274 29 86.2 32 ...........AGG..G............ CAGCGTCCCGGACCGTGCAAGATGCCCCAGTC 51335 29 82.8 32 .......T..AAGG............... ACACCCCACCCCATCCACAGCAGTCAGGAAGA 51396 29 86.2 32 ..........AAGG............... GAGTCCGGGCTGTGGGCGTTGAAGGGCTACAA 51457 29 93.1 32 .............GT.............. GTCGACGTCGCGTTCGTGCCGCGCTCCGCGTT 51518 28 79.3 32 ..A.....T....GT........-.C... ACCTTGACCTTGTCGACCTTCATCTCGAACAG 51578 28 89.7 181 ............TT...........-... TGGGTCAGCCCTTGAGGGCTGGGCCGCTTCCGCCCGCGCCCGTAGAGGCTGCCGCTGAATCCTCGTCGCATTGACGGGTGACGGCAGTCCGTCTTGGAAGCGTGCTTTGGGTTGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGTCGATGGCGCAGTAAGAATGCAGGTCAGTGAGT C [51588] 51788 29 93.1 32 ........................A...G CCGCCCTGCCCCGCCTGAGCGCGAACGTGCCG 51849 29 96.6 32 ........................A.... TGCGGGAGGCCATCCGCCGCGCTGTCTGTGAG 51910 29 96.6 32 ........................A.... AGTTGCAGACGCTCCCGCTCGCCGCTCACCAG 51971 29 96.6 32 ........................A.... CCCGCCGCGCTCGCCCTGGCCACTCTGGGCAT 52032 29 96.6 32 ........................A.... ACCGTCCAGTCCAAGTACACAGCTCCCTACCG 52093 29 96.6 32 ........................A.... CTGAACTTCGGCAAGGCGGTCGGTGCACGCTG 52154 29 96.6 32 ........................A.... CAGGCGGCGCGCACCGTCGCCGACACCCACGA 52215 29 93.1 32 .................A......A.... GAGCTGTGCACCGCCACGATCAACGACCGACG 52276 29 96.6 32 ..............T.............. GGTACTCGCGTCAAGGCGCGCGGGTCAGGCGT 52337 28 86.2 32 ...........AGG...-........... ACCGCCAACGTGGTGGCCGAACGGCTGCGCCC 52397 29 89.7 32 ...........AGG............... TGGCGGTGCATGCCCGTGCTCACCGGCGCCAG 52458 29 93.1 32 .......................T.C... GATACCAGCAATCTCTGTGAGTCGGCGTCCCG 52519 29 89.7 8 ............T..........AA.... GGGGTCAG Deletion [52556] 52556 29 93.1 70 ......AT..................... TTCCTTGGCTGGCCGCCCTGTTGGCGGTCATTGGTCCCGTGATTTCTGGGTCGGGGTTCGCCAATGACAG C,GACA [52558,52567] 52660 28 82.8 130 .......T.....AT.T.....-...... CCGCGCCTGGGTACCGCCGGCCCGGGTGGGCCGTGCTCCCCACCTCGCGACCCAGGTGCGGTGCTCTCCCGTGCGTGTGGGGTGGCTCTGAGCCGGCTGAGCTGGCCATCTGGACAACGTTGGAAAGTGC 52818 29 79.3 133 ..C.........G............GATG GGGATACTTCCCTCGTCGGCGATGCATGCAGCGGGTTGCCGCCGCATCGTCATCGCCGAAGGCAGAGGCTGGGGATTCGGTGAAACTCGCGAGTGTGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT A [52828] 52981 29 89.7 32 .C...........GT.............. GGTCAGGAACGCGGCCACACCGACGCCCCGAA 53042 29 89.7 32 ..A..........GT.............. GTCTTCTCGATCATCTCGTCCGTGTTCACCGC 53103 29 82.8 32 ...T........TGT......G....... CCAGGGACCGCGTCGTCAGCGGCCACACCCCG 53164 28 86.2 0 .............GT..-..........T | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 35 29 92.6 43 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCGTACTTGGCCCACACGCGCTGCGCAGCTGCAGACAAGCGACACGACAATCCCGACTCGCCGTACTCCCCCACACATGCCACACGCAACAACTACAGGCCCACCCCGCCCCTCATCCTGCTTTTCCGGAAAACCAACCGGACTTCCCACTGGCGCTGTACGCACAGAAAGCACAGAGGGCCGTCCCGCCTGACAACCTCGACTCCGCGTAGCCCATCGAGCGGCAGCCATCTCCCCAGCAGCGCCAAAGATGGTCATGCCGTAGATGGCAATGTCCGCTCTTGGTGACGTGCTCGCCGCCCGCGGGGAGGCCCGCCGCCCTTCGGCCGTCAGCGCCGAACGTCCGGCCGTGACCCCACAGGTGCGGATGCCGCCTCCCCCTCATCGCGTGGGAGGATGAAGAATATTTGCCCTGTAAGCATGTTTTGGCCTGTATGCCGGATTCGGCAAAAGTCATGAAGAGGAAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : TCAGGGTTGGGGCTGCGAGCGGCGTGAGTGGACCTCAGATGAAGCTCTGACTTCGTCATCTCTGGCATGGCGAGCACTCGGTTAGGTCAAGATGCCCGCCATGAAGCGGTTGAAGAAGGTCAGCCTAGTCATCGCCGCCCTTGGTCTAGTCATCGGTTACGGCGTCCTGCTCTGGAAGGGACCTTGGCTGTTCGACGGCAGCCACGTTCGAAAGCGCGATCTCCAGCCGGCCGACGGAGTCGTCATCACCGGGTTCCGTACCATGGTCGTCGCAGTCGGAGCCGGGACCATCGCAGCCATCGGCCTTTGGTACACGCACAAGAGCCATCGGCAGACAGAGGAACTGTTCCGACACACACGACGCAAAGATCAAGACCAAGCCGACCTGACTCGAGAAGGGCAGGTCACAGGTCGCTACGTGGAGGCGATCAAGCTCCTGGCCTCTGACAAGCTCCATGAACGGCTCGGCGGTATCTACGCCCTCGAGCGAGTGATGGCGG # Questionable array : NO Score: 4.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-1.03, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 55198-55714 **** Predicted by CRISPRDetect 2.4 *** >NC_017766.1 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55198 29 100.0 32 ............................. CCGCTCAGCTCGCACCGCCGGGCGGCGCGGAC 55259 29 100.0 32 ............................. CCATCAGTACTCCCGACAGAGCCCACCGGTTC 55320 29 100.0 32 ............................. GCGGGTGCCAATGTCCTTGCTCATCAGGGGTT 55381 29 100.0 32 ............................. GACATGCGCTCGCCCCTGGAACGGCAAGGGCG 55442 29 100.0 32 ............................. CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGG 55503 29 100.0 32 ............................. AAGGTGACGAGCTGGCCCGGCCTGCTCGCCGT 55564 29 93.1 32 ..........C..A............... CAGTTCATCGTCGGCGTCCGCCAGGACATCAC 55625 29 93.1 32 ...T......C.................. GACACCCTCGGCTACAACCAGTTCGCCACCAA 55686 29 82.8 0 ..........CGCC............G.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Left flank : GAATCGGGGGTGTCGCATGCGACACGCCCGCGACACCACCAGCTGCGGCGGTGTCGGCGCGGCATCCAACCCCAGCTCCTCCGCCAGCAGCATCTGCTCCCGGCATGTGCGGGGATGGTCCCAAGTACGGCGGATACGCGTACGGGTCCGATCCTTGCTCCCCGCGCCCACGGGGATGGTCCCGGAGCATTGCCATGCTCAAGATCGAGGTGAAGGTGCTCCCCGCGCACGCGGGGATGGTCCCCGGGCCCGGTCACCTTCCAGTCCCTCGTCCAAGTGCTCCTCGCGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGACCGGCTGGCCGTGGCCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTTGAAAGTGTGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGTGTGCTCCCCGCGCCCGCGGGGATGGTCCCCTCGACGGGTTCGCCGAGAAGGTGCTACACCCGTGCTCCCCGCGCCCGCGGGGATGGTCCCCCCATGGCTTGGTTCAAGGACGTGGACCTGGAGTGCTCCCCGCGCCCGCGGGGATGGTCCCCCCACTCTGGCACTGTTTCAGGCCATTGCGTAGTGCTCCCCGCGCCCGCGGGGATGGTCCCGACTTCCCGCGAAAGTGTTGCGAACCTAGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 55971-57626 **** Predicted by CRISPRDetect 2.4 *** >NC_017766.1 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 55971 29 100.0 32 ............................. CTCGACGGGTTCGCCGAGAAGGTGCTACACCC 56032 29 100.0 32 ............................. CCCATGGCTTGGTTCAAGGACGTGGACCTGGA 56093 29 100.0 32 ............................. CCCACTCTGGCACTGTTTCAGGCCATTGCGTA 56154 29 100.0 32 ............................. GACTTCCCGCGAAAGTGTTGCGAACCTAGGGT 56215 29 100.0 32 ............................. TCCGGTCGTGCACGACTGCGCCGACTGCGGAC 56276 28 96.6 32 .................-........... GGCCACAATCGCGACCTGTTCGAGAACAAGGC 56336 29 100.0 32 ............................. GCTCCTAGGTGGGGTGCCCGCCGGGGACGTGG 56397 29 100.0 32 ............................. CACGCTGGGACCTCACCCTCGGCGCGGCCTCC 56458 29 100.0 32 ............................. GCCACGGCCTCCCGGCCGGAGAGCTTGTGCCG 56519 29 100.0 32 ............................. GCGTCGTAGAGGCGGCGATCGTTGCTGCCCTG 56580 29 100.0 32 ............................. CTGCCTGAGGGGGTCCCCTATCCGAAAGAAAC 56641 29 100.0 32 ............................. GGCAGACCAGGGCGATGCGGGAACTGTCCCGG 56702 29 100.0 32 ............................. GAGGTCGCCAGTCGAACGGCACCGACTTCACC 56763 29 93.1 32 ..............T...........T.. GGGACACCCTTCGCTGTCGGCAGCGTCTGGAC 56824 28 75.9 195 ........A.T.......A..CC..-.G. GGGTCGCCGCTCCACCACATCCGCGAGGCCGAACGGCTGACCGTGGCCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGACCGTCTCCAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGTCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT A [56842] 57048 29 100.0 32 ............................. GACGTGCTCACTTGGCGATCTCCTTACGGGCG 57109 29 100.0 32 ............................. GACGAGGTAGTCACCCTGGTCCGGATCCGTCG 57170 29 100.0 32 ............................. ATCGAGAATCATTTCGTCGTCGACCCCGCGAA 57231 29 100.0 33 ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGGG 57293 29 100.0 32 ............................. AGGTTCCCGTACTGGCGGAGCGGCAGGCCGAA 57354 29 100.0 32 ............................. GTCTGGCCCAACTGGTGCCAGGATCATCCCCA 57415 29 100.0 32 ............................. CAAGGTGTCAGCACGAGACACAGGGGAGGCCA 57476 29 96.6 32 ...............A............. GGCGGCCAGTGCGTTGAGGTCGCCACCAACCT 57537 29 100.0 32 ............................. CGGGCCCGGTCACCTTCCAGTCCCTCTTCCAA 57598 29 89.7 0 .......T......T...........G.. | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 25 29 98.1 39 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGGGTGCTCCCCGTAGGCGCGGGGATGGTCCCAAGGTGACGAGCTGGCCCGGCCTGCTCGCCGTGTGCTCCCCGCAGACGCGGGGATGGTCCCCAGTTCATCGTCGGCGTCCGCCAGGACATCACGTGTTCCCCGCAGGCGCGGGGATGGTCCCGACACCCTCGGCTACAACCAGTTCGCCACCAAGTGCTCCCCGCGCCCGCGGGGATGGTGCCGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGTGTGCTCCCCGCAGGCGCGAGGATGGTCCCACCGCGACCTTCCGGTGGAGGGCGTGCAGTTCGTGCTCCCCGCAGGCGCGAGGATGGTCCCGGCCGCATCACCGGCCCCGGCTTCGAACTGCGGTGCTCCCCGCAGGCGCGAGGATGGTCCCTGACCGCAGGCCGCCGCCACGTCGCGCGCCTTGTGCTCCCCGCAGGCGCGAGGATGGTCCCGACGCGCTCGTGAAGGTGGCCAAGCAGTACC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 57883-58764 **** Predicted by CRISPRDetect 2.4 *** >NC_017766.1 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57883 29 100.0 32 ............................. ACCGCGACCTTCCGGTGGAGGGCGTGCAGTTC 57944 29 100.0 32 ............................. GGCCGCATCACCGGCCCCGGCTTCGAACTGCG 58005 29 100.0 32 ............................. TGACCGCAGGCCGCCGCCACGTCGCGCGCCTT 58066 29 100.0 31 ............................. GACGCGCTCGTGAAGGTGGCCAAGCAGTACC 58126 29 100.0 32 ............................. TACGAGAACGGCCGCTCCGAGCCGAAGTCGCC 58187 29 96.6 32 ..................G.......... GACCCTGGTACCGGATCACCGACCGGTACCAG 58248 29 96.6 32 ..................G.......... GCGACTCGGGCCGCCATCGAACGTGCCGAGGC 58309 29 93.1 32 A.................G.......... GAAGGCGCGATGGCCGGACGCCGGGCGATCGA 58370 29 89.7 32 ..............G...G.A........ CCGCCGACGATCAGGCCGAACGTGCCGGTCAG 58431 29 93.1 32 ..................G.........T GCGGGTGGGTCGCCGCCGACCGGCGCACCGCC 58492 29 86.2 32 ......T...........G..GA...... GACTCTGGGACCACGATGGTGGTCAACGTCCT 58553 29 86.2 32 .......T...GCC............... CATTTCGATCCAGAGCACGCCGGCCGCCGCCA 58614 29 79.3 32 ...........GCC..T.G.........T GCCCTGCACCACCACCATTTCGTCGGCCGGCG 58675 29 86.2 32 ...........GC.T...G.......... ATCACCCCCGTGCCGAACACGCCGACGTCGGT 58736 29 79.3 0 ...........GC.T...G.......GG. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 92.4 32 GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Left flank : GTCTGGCCCAACTGGTGCCAGGATCATCCCCAGTGCTCCCCGCGCCCGCGGGGATGGTCCCCAAGGTGTCAGCACGAGACACAGGGGAGGCCAGTGCTCCCCGCGCCCACGGGGATGGTCCCGGCGGCCAGTGCGTTGAGGTCGCCACCAACCTGTGCTCCCCGCGCCCGCGGGGATGGTCCCCGGGCCCGGTCACCTTCCAGTCCCTCTTCCAAGTGCTCCTCGCGCCTGCGGGGATGGTGCCGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CTCGAGGGCGACGGGCGGCGAGAATGTCGTCGAACTGGGCGAGGACGCTGCCACCGGCGGCCGGGCGACCATGGCGCGCTCGGTCATCATCATGCGGATCGCGCTGCCGAGCCCGAGCGGCTCGCGGCCGTTGTGCCGTACGACCGTGCCAGTGCGCCGCTTCGGCTTTTCCTTCCGGGCGGCCTCCGTTCTTCCGTGCCGCTTCCCGGGTGGCGACCAGGGCTTGGCGCGCGAGGTCGACTCTGCTCAGCTCGGTGCTCACGCGATCACCGTCCGGGCCGTGTCGCTGTCCAGCGGGCGGGCGGCGAGTTCGGGCAGCCGGTCCGTCCACGGCGTGGGTACGGCCGCCTCGGTCCGGACGGCCGCCCACTCGCGCAGATGCTCCAGCCGCGTCGCCAGCAGGTACTGGGCGGTGCGCTCCCGGGCGGCGTCGGCGGCCTTGGTCGCGGCCGCGATGGCGTCCGCGCTGTGCGGGTTGTGCTTATACCAGCGGCGGCCTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //