Array 1 545-2032 **** Predicted by CRISPRDetect 2.4 *** >NZ_OABL01000034.1 Neisseria meningitidis strain Neisseria meningitidis isolate R663, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 545 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 611 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 677 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 743 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 809 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 875 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 941 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1007 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1073 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1139 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1205 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1271 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1337 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1403 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1469 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1535 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1601 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 1667 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 1733 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 1799 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 1865 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 1931 36 100.0 30 .................................... CAACCCGTATGCCGCCTGCCTGTTTTTCTT 1997 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //