Array 1 66808-67628 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIRB01000112.1 Schaedlerella arabinosiphila strain MD300 4_Assembly.final.scaffolds_scaffold25.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66808 28 100.0 33 ............................ TTTCCGAAAGTTTATTGGAAATTTGAAGAAGTC 66869 28 100.0 33 ............................ TCTGTATCAATCGAAAAAGCCTTTCCAGATTCA 66930 28 100.0 33 ............................ TTGATTGTAAATGCAAATTGCGAAAAGATAGCC 66991 28 100.0 33 ............................ TAAAGGATGGAGATCTGTAAATCTCACCAATTT 67052 28 100.0 33 ............................ TGGCCCTCGATGATGTCAAAACCAAAAAACCCT 67113 28 100.0 33 ............................ TGGTCAATTGTGCGCCGAAAGGATTGTAAAAAA 67174 28 100.0 33 ............................ TATCCTTATCCTTTGTTACCTTAGATTTTGCAA 67235 28 100.0 33 ............................ TCACACCAAACAAAAACACGATCAAGTTACATC 67296 28 100.0 33 ............................ TGTATGCTTCAAAAGTGCACATCCCGTTTGGAT 67357 28 100.0 33 ............................ TTTCACTCCGACCTGTCCAAGAAGCACATACAA 67418 28 100.0 33 ............................ TGTAACGACGCAAACGTTGGCTACTCACAGGCA 67479 28 100.0 33 ............................ TAATACAACCAACTCCGGCAAAAATACATTATC 67540 28 100.0 33 ............................ TGGGTACTCTGCTCCATCTGAGGAAGAAAAACC 67601 28 89.3 0 ...............T...A.A...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 GTGTTCCCCGCGTGGGCGGGGGTGATCC # Left flank : AATCTTGACAGGATCGCTGAGATCGGTCTGCTGAAAATTGAGGAAAGTAAAATTGTACAAAAGTATCAGTGCCTTGTTTTATCTGGGAAAAGTATACCGGATCATATGGTAAAATTAACAGGTATTACAAATGAGATGTTAGAAAAGGAGGGAATTGGGGAAAAGGAAGCATTTGAAAAAGTGCAGGAGTTTATTGATAGCGCTCTGATTATCGGATATAATATAGAAGCTGATCTGGATTTTATTAAAAAGTCAGGAGAACGAACAGGTCAGAGAAATATAGTAAAAAAGGTTCGGGACGTGATGCAGATTGCCAGACGCAAGCTGGACGATGTGGATGATTATAGGATAGAAACAGTGGCATCTTATTTTTCTATTGATATAAGTGGTATAAACAGGGCTTTGACAAAATGCATGTTGATATATAGGATTCATTGTGAACTAAATAAATTATGACATGTTGGTTTAAGAAACTGCGATGTTTTAGGGATTTTTTTAGT # Right flank : CTATGGCGTGACGATTAAACTGATCGAAGCACAGAAATAAAGAAAGAGGGCTGCCGGAACATATGCTCTTTGCACAGCTATTTCCAGGCAGCCCCTGATTTATTGCCGGTTTACCTGCGGCCTGTTGCCGGGCCGCTATTTTAAACGCCGGTTTTTATTTCCCCATTCCTTAAACTTATCCCACGGATCTCTCATACCAATTCCAAAATACCCGTCTATTATAAGTATAAAAAGTGTATACACACTAAATACCAGTCCCCATTTTCCAATATTTTTCATAGAATGCTTCAAAATATAATCACCTCCCGCTTTTTATAATGCATCCCGCAGAACTTCCATTTTACAGGTATGCACCTTGGTCTTTTTATTATACGCGATTCCTACACCCAAAATCCGTCCGGTATACTTGGGCCTTTCTCCAAGCTTTCCTTCAAATTTTAGAGCATACTTTTTATTCTTAATCTGCTGGAGCGCTTCATCGGCCGTATGATCAACCTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21776-17315 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIRB01000023.1 Schaedlerella arabinosiphila strain MD300 4_Assembly.final.scaffolds_scaffold33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21775 32 100.0 33 ................................ ATTTTTTCTAGCGGAATACTATCTGCTGCATGG 21710 32 100.0 33 ................................ CAAGCAGCCGGCCAAGGGAAACGGGAGCTATAA 21645 32 100.0 33 ................................ CGGCCACCAGGCAGAATACCAACGAGTATATCA 21580 32 100.0 34 ................................ GTAAATATCCAGTATGGAGTCCTCGCATAGATTC 21514 32 100.0 35 ................................ TTTTTTACATCCTACCGCAAAGTCTTTTCGCATCT 21447 32 100.0 33 ................................ GGAAATATTTGATTCTCTTGCCCGTTCCGGTGT 21382 32 100.0 34 ................................ TTCTCCCACCATGATTTTTGCTTTGCTGACGCAA 21316 32 100.0 34 ................................ TGTTTATTGTTAAACTTTCACAAATTACAATTAT 21250 32 100.0 34 ................................ ATTTGCCCTCCAAAATCTATTATACTATGGCCAA 21184 32 100.0 33 ................................ GAGCTTCATGCGGTATGCATTGCACTGCTCCAC 21119 32 100.0 36 ................................ ATATTTTTGGGGAATAACCACAGTCCGTATTCCAGC 21051 32 100.0 35 ................................ ATCTTTTTCCCCTACACACATCATATATTTTTTTA 20984 32 100.0 35 ................................ TTCTGTTAAATCAGACAAAAAAACAACAGGAACCT 20917 32 100.0 35 ................................ ACTCCATTTACTCCAATAAAAACAACCTTTGCTTC 20850 32 100.0 34 ................................ CAATTTGTCAGACGAGCAAATAAATACGATTTTA 20784 32 100.0 35 ................................ ATGGGCTGAGTTGTTTGATGGCGATACCGTTGCAG 20717 32 100.0 34 ................................ TTTGATACTTTCCGCTATTTTTTCGACTTGCTCT 20651 32 100.0 35 ................................ TAACCTTATATCTGCCCCTAACAGTCCAATTTTTT 20584 32 100.0 35 ................................ GTCATTTCTTGCTGCTTTTTTAATCTTTTCCGAAT 20517 32 100.0 35 ................................ AACCTGCACAACGTTTTTATGCCCACACCAACAAT 20450 32 100.0 34 ................................ AAAGCGATAAATTGCCATCTCAACGTCAATCGTT 20384 32 100.0 34 ................................ CCGGACAGCTTGTTGTAAGCATATGTCTCATGCA 20318 32 100.0 34 ................................ CTTCTGTGAAGTACACGCCTTTTTTTGTTAAGAT 20252 32 100.0 34 ................................ AGTCCATTTATGTAACGGTTATAGACAACCACGC 20186 32 100.0 34 ................................ TTATTCCATAATGACTCGTTTAGTTTATTATCAA 20120 32 100.0 35 ................................ CCGTTACGGTCAATCAGAATTGCTAAATCCATGAA 20053 32 100.0 34 ................................ CACGTCAAAACCAGACTGTCTGGTCTGCCTTTTA 19987 32 100.0 34 ................................ CATCATACTGCGCCATAAAAAAGACACCTCCACA 19921 32 100.0 34 ................................ TTTATTGATTAGCAACAACCGTTGTTACATCCGT 19855 32 100.0 34 ................................ CGGATTTTGTATCAAGCAGACCGGATATGAGACC 19789 32 100.0 34 ................................ ATCTCTGACAGAACAGCGATAATATCTTTGTCTT 19723 32 100.0 34 ................................ CTCTTGTACCTTCTCAATCTCTTTTTCTTGTTCC 19657 32 100.0 34 ................................ AGCGTTGTAAAGCCAAAATACTGAAAATCTATAT 19591 32 100.0 34 ................................ TAATCCCCATAGATATTACCTGTTTTCCGGAAAG 19525 32 100.0 34 ................................ AGCTTGTCGAAATATCCCCCGTCAAGTCCTGTTC 19459 32 100.0 35 ................................ AGAAATAATTCTGTAGGAGGTGAATTATGGATTTT 19392 32 100.0 32 ................................ ATGACAAATTCCCTCTCGTGCTTTTCTAACTT 19328 32 100.0 34 ................................ CGACATATCAATTTTTTTGTTATCAACCAAACAC 19262 32 96.9 34 ........A....................... CGATCCCACCGCAATCTGTAAAAACGTACTACCA 19196 32 100.0 34 ................................ CAAGACCGGAAATCTTGTGTCAAAATCAATTCTG 19130 32 100.0 34 ................................ CGATCAAATCAATAATTGTTGTGAGCCCACTCCT 19064 32 100.0 34 ................................ GGATTTCCGAATCCGTCAAAAAAGGAGCACTCAT 18998 32 100.0 33 ................................ TGCCATGATCCGCAGCTCCCGCTCGTTGACAAG 18933 32 100.0 34 ................................ TCCCAGCGCCGTTAATAAAAAGATTGTTTGCCGT 18867 32 100.0 34 ................................ ACATATACACTTTGCATTCATCTATAACCTACAA 18801 32 100.0 33 ................................ TAAATCATCGTCTTGCATAAACCCTTCCTCTTG 18736 32 100.0 35 ................................ CCTGTAATCAAAAGAATACTTGACTGGCTGCTCCG 18669 32 100.0 35 ................................ CGTCCAGGATCGGCAGTACATCACTTTGTATATGC 18602 32 100.0 36 ................................ CCGTCATATGTCCGGATCATACCTCTGTCAGCTTGA 18534 32 100.0 34 ................................ TATAAAAAATATACTCCCCGCCGTGCGTTTCTAT 18468 32 100.0 33 ................................ TGTTCCTCCACCCTCTTCTTCCTCTTCCACTTC 18403 32 100.0 34 ................................ CACCTAAGTCGTGTTAAAAACACATTGTGATTTA 18337 32 100.0 33 ................................ TGACATCTTAACACCGCAGCAAATCTTTTCCCT 18272 32 100.0 34 ................................ AAGGCTTTTCCACGTTCGTTTTCTTGGCTCACAG 18206 32 100.0 33 ................................ CGCATTGTATACGCGATCATAAATCCCATTTAC 18141 32 100.0 34 ................................ TTTAGCACCTTGCAAGCATAAAAGTTCTTGCGTC 18075 32 100.0 34 ................................ ATCCGTTCCTCGTCTGCCTTCTCACGCAGCCTTT 18009 32 100.0 34 ................................ TGTCACTTTGTGCCCTGATAGTATTTCCAGTTCA 17943 32 100.0 33 ................................ TTGTCAGATTACACCGCCCATACATTGTACAAA 17878 32 100.0 34 ................................ GGGTGATCTAGCGGCAGTTTGTCTTTGTCAAACA 17812 32 100.0 35 ................................ AACTTGGTACAACAATCTCACCAAACTGCGGTACA 17745 32 100.0 35 ................................ TTGCGGCCTTCTTGATCTTTTCAGAATCCGCATAA 17678 32 100.0 34 ................................ CGTCTTAAAGTATGCTGCGACGGTATCTCCATCA 17612 32 100.0 34 ................................ GTCCGAGAGATTAGAAAACCAGTCCGCAAGTTCC 17546 32 100.0 35 ................................ AGACAAAATTTGACTCCTTCGTAGAGCGTTCTCTG 17479 32 100.0 34 ................................ CACAAGGTATGAGCAAATGGCGGATCATCGAAAA 17413 32 100.0 35 ................................ CCGGAAACAGGGATCACCGAAGCCCTGAAAGGCGA 17346 32 93.8 0 ..........................A...G. | ========== ====== ====== ====== ================================ ==================================== ================== 68 32 99.9 34 GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Left flank : GGATGCATACCCACCCTTTTTATGGAAATGAGGAAATAGAGGATGCTTGTATTAATTACATACGATGTAAATACGGAAACGGCAGCAGGAAAAAAACGATTAAGAAAAGTAGCTAAGCAATGCGTAAATTACGGAAGACGAGTGCAGAATTCCGTGTTCGAATGCATTCTTGACAATGCACAGTGCGTATTACTAAAATCAATTTTGGCGGATATTATCGATAAAGAAGTAGATAGCTTGAGGTTCTACTATTTGGGAAATAAGTATCAAACGAAAGTAGAAAGCATAGGTGTCGAACGAGGACAGCCAGTAGATGGTGCACTGATTCTATAATTATTTTGTGCGAATGGTATGTGCACATGCTCCAGCAGGGGGATTCGCACCCAAAATTATGCTAATATATACGAATAAATAATATAATTTGTAGTGATTAAGAATCATACTTTGTAAATTGTACAAAATCATGCAGGATTGACATAGAAAATATGTATGATTTTGTA # Right flank : TTTTATGTCCAGTGTGTCCGCTCTGGTGGCGTATCGTTCCCCACGTGGATTGAAATTAAGTTGAAAATATTGACATAAACGAATATACTATAATTGTGCTACAAAAGTATATTCGGAAAGGATGTGCAGTGATATGGGCGTTTATCTGAACAGCAGAAAACCATATCTGCTTTTTATGTGGATAAGACAAGCATGATAGCTGATCTGGTGCCCGTTTTGGAGTCTGAGGAAAATGGGGCGGAAAATGCGGGAATCAGCCAGGGGAAAGGCCTTAAGTATGTGTGTATCACAAGGCTGCGCCGCTTTGGAAAAACAGTGATGGCTAACATGATCTCATCGTATTTTGGAAAAGGGATTGACAGCAGCAGTACCTTTCGGAATTTAAAGGTGTCAGAGTATAAGTGGTTTAAAAGGCATTTGAACCAGCATAATGTAATTCACATTATGTTTAATGAGATGCCGGATGAATGTACAACTTACAGACAATATATTTCCAGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //