Array 1 66452-65524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBY010000031.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66451 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 66391 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 66331 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 66271 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 66211 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 66151 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 66091 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 66031 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 65971 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 65911 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 65851 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 65791 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 65731 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 65671 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 65611 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 65551 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147588-149176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBY010000003.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 147588 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 147648 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 147708 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 147768 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 147828 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 147888 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 147948 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 148008 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 148068 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 148128 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 148188 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 148248 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 148308 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 148368 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 148428 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 148488 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 148548 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 148609 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 148669 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 148729 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 148789 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 148849 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 148909 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 148969 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 149029 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 149089 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 149149 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 159107-157702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBY010000003.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159106 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 159046 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 158986 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 158926 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 158866 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 158806 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 158746 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 158686 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 158626 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 158565 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 158505 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 158445 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 158385 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 158325 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 158265 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 158205 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 158149 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 158089 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 158029 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 157969 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 157909 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 157849 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 157789 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 157729 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //