Array 1 132-1119 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBV01000032.1 Pseudomonas aeruginosa strain Pa2562 contig_0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 192 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 252 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 312 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 372 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 432 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 492 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 552 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 612 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 672 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 732 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 792 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 852 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 912 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 972 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 1032 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1092 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-1900 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBV01000035.1 Pseudomonas aeruginosa strain Pa2562 contig_0035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 192 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 252 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 312 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 372 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 432 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 492 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 552 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 612 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 672 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 732 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 792 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 852 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 912 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 972 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1032 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1092 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1152 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1212 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1272 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1333 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1393 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1453 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1513 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1573 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1633 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1693 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1753 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1813 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1873 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11831-10426 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBV01000035.1 Pseudomonas aeruginosa strain Pa2562 contig_0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11830 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 11770 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 11710 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 11650 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 11590 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11530 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11470 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11410 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11350 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11289 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11229 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11169 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 11109 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 11049 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 10989 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10929 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10873 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10813 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10753 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10693 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 10633 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10573 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10513 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10453 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //