Array 1 396518-397888 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIF01000002.1 Escherichia coli strain NGE5 NODE_2_length_520373_cov_17.4725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 396518 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 396579 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 396640 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 396701 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 396762 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 396823 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 396884 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 396945 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 397006 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 397067 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 397128 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 397189 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 397250 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 397311 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 397372 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 397433 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 397494 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 397555 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 397616 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 397677 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 397738 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 397799 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 397860 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 423591-425877 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIF01000002.1 Escherichia coli strain NGE5 NODE_2_length_520373_cov_17.4725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423591 29 100.0 33 ............................. TGGATTATATTAATATTATGGGCCGCTTTCGGC 423653 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 423714 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 423775 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 423836 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 423897 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 423958 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 424019 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 424080 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 424141 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 424202 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 424263 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 424324 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 424385 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 424446 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 424507 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 424568 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 424629 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 424690 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 424751 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 424812 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 424873 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 424934 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 424995 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 425056 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 425117 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 425178 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 425239 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 425300 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 425361 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 425422 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 425483 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 425544 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 425605 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 425666 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 425727 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 425788 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 425849 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //