Array 1 47812-48681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLQO01000003.1 Escherichia coli strain MOD1-EC5216 MOD1-EC5216_3_length_226248_cov_32.0982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47812 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 47872 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 47932 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 47992 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 48052 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 48112 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 48172 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 48232 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 48292 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 48352 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 48412 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 48472 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 48532 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 48592 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 48652 28 85.7 0 ....................A...C.CT | T,C [48672,48676] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57743-58851 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLQO01000003.1 Escherichia coli strain MOD1-EC5216 MOD1-EC5216_3_length_226248_cov_32.0982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57743 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 57803 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 57863 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 57923 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 57983 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 58043 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 58103 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 58163 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 58223 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 58284 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 58344 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 58404 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 58464 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 58524 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 58584 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 58644 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 58704 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 58764 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 58824 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64330-63631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLQO01000001.1 Escherichia coli strain MOD1-EC5216 MOD1-EC5216_1_length_297563_cov_32.956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64329 29 100.0 32 ............................. AGCGAACCACGCTGGCTTACTGAAGCTCATAA 64268 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 64207 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64146 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64085 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64024 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 63963 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 63902 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63842 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63781 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63720 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63659 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91220-90032 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLQO01000001.1 Escherichia coli strain MOD1-EC5216 MOD1-EC5216_1_length_297563_cov_32.956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91219 29 96.6 32 .....T....................... CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 91158 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 91097 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 91036 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 90975 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 90914 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 90853 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 90792 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 90731 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 90670 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 90609 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 90548 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 90487 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 90426 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 90365 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 90304 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 90243 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90182 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90121 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90060 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //