Array 1 48-746 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFK01000034.1 Streptococcus mutans strain PKUSS-11 C123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 33 ............................ CTGACTTAGTTGGGTATGTAACATCAACTTATC 109 28 100.0 33 ............................ TACTGTAGTGTACAACATCAGAGTTATTGGATA 170 28 100.0 33 ............................ GCTGGTCTAATGCTTCTTTTTGAGCGTTAGTTA 231 28 100.0 33 ............................ TGTAAAAATCCGTAATTTTTTACTTGACATTAC 292 28 100.0 33 ............................ TCGGGTCGCTAATGCTGAAAAGCGCTTAACGAT 353 28 100.0 33 ............................ CACGAATACATGTATAGCGTTAATTGACAGCGA 414 28 100.0 33 ............................ TACTTTGTCGCGGTCAAAATTCTTAGAACCTTC 475 28 100.0 33 ............................ TGCTTTCTGCGCATTCTTTGGTAAGTCTGCAAA 536 28 100.0 33 ............................ TGTCTATCATGACCAGCTAAACGCCAAGTACCC 597 28 100.0 33 ............................ TAGTAATCTTTCCCCAATAAATCCTTTGTCATT 658 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 719 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : AGCGGGGGTGATCCTAATTTACTTGCTTTACCAGCGTTGCCAATATCA # Right flank : GACTTTACCTTTTTCACATTGCCAATCTAGCCAATTTTACCCGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12450-13515 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFK01000019.1 Streptococcus mutans strain PKUSS-11 C153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12450 28 100.0 33 ............................ TAACCTGTCGCTAGAAGTCTTGTCAGAAGTTAA 12511 28 100.0 33 ............................ TAGTCTTTATCTAGTCCACAAGCTAAAACTTTA 12572 28 100.0 33 ............................ TGCAAAAGTCAAAAATCAAAATCAAAAGCAAGC 12633 28 100.0 33 ............................ TAGAAATCAAGCGTGAATTGACAGCGCCTGTAA 12694 28 100.0 33 ............................ TACGGTTTAGTAGACTGTCAGTAGTTTTTTGAA 12755 28 100.0 33 ............................ TAAATTAATCAACAAAGTAAACGTTAACGGTCA 12816 28 100.0 33 ............................ TAAGAGCCGCCGCCTGAATTTAAAATCAGCACA 12877 28 100.0 33 ............................ TGCAGTTGACGCTCCACTTGCCAAAAACAAATA 12938 28 100.0 33 ............................ TATGAGCGCAAGCTTTGACGAAGCTAAGAACTA 12999 28 100.0 33 ............................ TATTAGTACTAGACGAAGTGGTGAAACGAATAC 13060 28 100.0 33 ............................ CGCGCCTTACGTGTTAAATGTAAGCACTGACAG 13121 28 100.0 33 ............................ TGCAGTCATGACTTTTCCTGCGGTATCAGCCAA 13182 28 100.0 33 ............................ TACGGTTTAGTAGGCTGTCAGTAGTTTTCTGAA 13243 28 100.0 33 ............................ CCACAATTTTATGAACCCGCAAAACTTAAAGAA 13304 28 100.0 34 ............................ TGAAAGCTGTTCTTGAAACTGAGTTAGAAAACGA 13366 28 100.0 33 ............................ TAAAAATGAGAAAAAAGAAAAAATATTCTGTAA 13427 28 100.0 33 ............................ TACGAGCAGGAACTCAAAGAGCGATATGAAAGA 13488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : GACTTTACCTTTTTCACATTGCCAATCTAGCCAATTTTACCCGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23315-23081 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFK01000008.1 Streptococcus mutans strain PKUSS-11 C175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23314 35 88.9 30 -.....AC.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA TT [23306] 23247 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 23181 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 23116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTTA # Right flank : AATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 115770-115620 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFK01000008.1 Streptococcus mutans strain PKUSS-11 C175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115769 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 115708 28 100.0 33 ............................ ACATTCTTAGCATAAAAAGAGCCAAGAATAGCA 115647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GCGGGGGTGATCCGACTTTACCTTTTTCACATTGCCAATCTAGCC # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //