Array 1 952014-955949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022135.1 Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 952014 29 100.0 32 ............................. TCATCACCACCGCCATTGCCACCACCATGCCG 952075 29 100.0 32 ............................. GATTCGTTAGCCGTGTCTAGGCTGGCGGTTGA 952136 29 100.0 32 ............................. GGGTTGGTGTTCGTGCTGGCATCACAATTTCT 952197 29 100.0 32 ............................. CGATTCCGGTTTCTTTGTTGTAGCTTTTTGCA 952258 29 100.0 32 ............................. GGGGAGGAGGTAAATCCGGCGCATTTTTTAGA 952319 29 96.6 32 ............................T GCAGGTAGTGGCGCTGGGCTGGTGGAGGATGC 952380 29 100.0 32 ............................. GGAGAGAACGCCACCGCTGCAGATTACTGTGG 952441 29 100.0 32 ............................. GGGGCTGGTGGTTCTATTTTCCAGACTGGCGC 952502 29 100.0 32 ............................. TCGTTACTACCTGCGCGATAAAGCTGGGCTTC 952563 29 100.0 32 ............................. TTTACCCCGTTTACTCCACGTGACATAAGGCG 952624 29 100.0 32 ............................. GACACGCAAAATAACGCCATCGAGCAGAGCGT 952685 29 100.0 32 ............................. CCGACTCTTATCAGGTCGCCTGTTCAAGCGCT 952746 29 100.0 32 ............................. AGATTGGGACTGGCGCTATCCCTCGCGAGCGT 952807 29 100.0 32 ............................. GTGGCGGCACTGGCGATTCATGACCGAGGGTA 952868 29 100.0 32 ............................. AGGATGCGCTTGTTGGGGCTGGTGGTGAGGTT 952929 29 100.0 33 ............................. TCGCCATACAGTGCGGTAACCATCCAGTAGTGC 952991 29 100.0 32 ............................. GATAGCCAGACAGAATGACGTGCACGTTATTC 953052 29 100.0 32 ............................. TTCCGGCGCAACTATTACATTAACGGCAGTCA 953113 29 100.0 32 ............................. GGCATTTCTTTGGCGATAATGAGGATGTAGCC 953174 29 100.0 32 ............................. CAATACTCGCGTTAGTAACAGAGCTACAGGAA 953235 29 100.0 32 ............................. TAGCTCCAGTAGTAACGCCAAATATCTGAGGC 953296 29 100.0 32 ............................. GGTTATGATTTTGTTTGCCTTGATGGGGCAAG 953357 29 100.0 32 ............................. ACGCTGGAGAATCATACTCATCCAATGGAGTG 953418 29 100.0 32 ............................. ATTGCGGCGTCTGTGGCAACTGTGGTGGTTTC 953479 29 100.0 32 ............................. CAGATACGATCTCACCCGTAACTGACTTAAAG 953540 29 100.0 33 ............................. GTCGCGAGACAATGAACACCACTCGACCAACTC 953602 29 100.0 32 ............................. ATAGGTTCTATTCCGGTCAGGCCGCGGCAGAA 953663 29 100.0 32 ............................. ACTGAGTCAATGCAGTGGGATAGCGCCATCAG 953724 29 100.0 32 ............................. GCGGTGACGCCACCAGCCTTGAAACACTGGAT 953785 29 100.0 32 ............................. CGCTTTCCTTCAAGAGTGTTGAAATGCCGCGC 953846 29 100.0 32 ............................. TCCCCTTTAGTAGTTAAAGACCGCCAGCGAGT 953907 29 100.0 32 ............................. GAAATCCATCTACGGCGACGACAGTTGGCAGG 953968 29 100.0 32 ............................. GCTACTACGAAGACGATGAGTTATTCGTGTGT 954029 29 100.0 32 ............................. ATTCAAAACGGCGCTCTATCAATTGGCACTCC 954090 29 100.0 32 ............................. GTTGTGGGGCGGCGTAGACAATGCGGGTTCGG 954151 29 100.0 32 ............................. GTTCCAATATCACCGATATTCTTCATCTGGTT 954212 29 100.0 32 ............................. CAGGTAATTCAGAAAGAGGCTGTAGAGGCAAT 954273 29 100.0 33 ............................. TCATGCCTTGATGCGTTCTACGCTGACGAGGGC 954335 29 100.0 32 ............................. GATGCAGTAAAAAAGATTGGGAATCATATGCT 954396 29 100.0 32 ............................. ATAGCTCTGGCGGTGTACCCCTGCTGATGCAG 954457 29 100.0 32 ............................. GGAACTAAATGCAGGACTTACCACGCTGAAAC 954518 29 100.0 32 ............................. GGTGTTCGAACAATTCCAGGCATAACCCACAA 954579 29 100.0 32 ............................. TATCAGTTACCAGAACAATATATCGCATGGTT 954640 29 100.0 32 ............................. GAGACCTGAAAATATTCAACACCTGCACAGAA 954701 29 100.0 32 ............................. CGACCAGAACCCGCCTATAACGTCCCGGAACT 954762 29 100.0 32 ............................. GCCTAACGCCAACGGAAGAGGATATGGAGGGA 954823 29 100.0 32 ............................. AAAACCAGGACGACGATCTGTTTGACTGCTTT 954884 29 100.0 32 ............................. GAGATGCGTTTATCGGAGTAGTTCCATCTTTT 954945 29 100.0 32 ............................. CAGCCTTTACATCCGCTATCTGCGTCGCGCTA 955006 29 100.0 32 ............................. CGGGGTCAGCGTCTGGTGGGAGATAAAAAATG 955067 29 100.0 32 ............................. GGAGAAACACCCGCAGCACCACGGGCGATGCA 955128 29 100.0 32 ............................. ATTACAAATAATGCGACTATGTATGCAGAAAA 955189 29 100.0 32 ............................. GCGCGTTGATAGGTATTGTTCTGGGTATTGGT 955250 29 100.0 32 ............................. CCAGTGTAATTGTTGTCTGTGACATATAATCC 955311 29 100.0 32 ............................. GGCTTCGTCAGCTTATCAACCAGGCTTAATGT 955372 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 955433 29 100.0 32 ............................. ACCCGACGCCCAGATACTGCGCTTTTGACTGA 955494 29 100.0 32 ............................. CGACCTTCATTGATGTAAACGACACCATCTCC 955555 29 100.0 32 ............................. TTTACCGCCGCTCAGCTTCGTACCCTGGTAGA 955616 29 100.0 32 ............................. GCTTACATTGAGATTCCTTTGTTTGTCGTGGG 955677 29 100.0 32 ............................. GTGGACGACCTTGAGCATTGATTTAGGTTACG 955738 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 955799 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 955860 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 955921 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //