Array 1 45460-44176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTER01000011.1 Clostridium tyrobutyricum strain FAM22552 scaffold0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45459 30 96.7 37 A............................. CGTTAATTCTGGTGCTTTCTTTTTTAATCATACTAGA 45392 30 100.0 36 .............................. TTTTTTATCAATCCCTTCTTTTAATTAATATTATTA 45326 30 100.0 37 .............................. TTTAATCTTATATAAGCACCACTATTTTGAGTTCCTC 45259 30 100.0 37 .............................. CCTATTGCTTTACACACTTTATTGCCAATTAAAGTTA 45192 30 100.0 36 .............................. TAGTATATACTATAATCAAACTAAATAGAGGAGAGA 45126 30 100.0 36 .............................. CAAGATAAGAACATGACATATATTAAATTAAAAAAA 45060 30 100.0 36 .............................. ATATCTAATTGATCTAGTACATTAAGTGTAAATTTT 44994 30 100.0 36 .............................. ATATCAGTTTATAACACCTTTTCCCATTATATAAGT 44928 30 100.0 36 .............................. GGAATTCAAGGTATGGGGTGATGGATTGAATGTAAA 44862 30 100.0 35 .............................. ATTTTTAGAGATATTTGCACAAGAAAGTATTGAAT 44797 30 100.0 36 .............................. TATATTTTCACTCCTTATTATTTTAATCATCCTACT 44731 30 100.0 34 .............................. TATTAATTCCTCCTATTTTTTATTAAGCAATTTC 44667 30 100.0 35 .............................. TTTGTCATAGTACTTGGCAATATTTTTTCTCCATC 44602 30 100.0 34 .............................. ATAGGCTTGAATTTAATATTTGTAATAGGCTTAA 44538 30 100.0 36 .............................. TATGTTTTGCCATCTATATAGTGGTCTATAAAAGCT 44472 30 100.0 36 .............................. TTTGGTGCTGGTGTAGCAGTGCAAGCCAATTTATAA 44406 30 100.0 36 .............................. ATACTTTAGATGATAGTTCGGATAAAACTTCTCTAT 44340 30 100.0 38 .............................. TCTACTACAATATCTATAGGGCCAGCTCCTTTAATAAA 44272 30 100.0 37 .............................. AAGTTGGTAAATATCCTTCAACGTTATTTTGAGCCAA 44205 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.5 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ATCTGCAATTCGGCGAAAATGAAAAAGCACTGGATATGCTTCATAAGTGGATAGACTACATATCAGTCAATAATATAAACAAGACAAAGGATTTCACAAATATATGGTGCTTTAATGAACTCCCAGGTGGAGATGATAAACTCACTTCGAATTTATGTGAAAGTATGTTTAAAATCTTAGAGGACTCTCTATTTGATCCAATAAGAGACAGTATTGATTTTAAATCCATTGTAGCTAGATTGAAAAGTATTGCTGATAATTAAACTTTAACTGTATAAGATAAAGCCTGTCTGGTCTTAAGGTAATTTTATTATTTTAAATTAATTTTCCAATCAAAATCATTGATAATACTCTGGTAAATATTGATATAATTAAGTTTAGAGATATTTTTTATTGTCTCAATAGGGAAATGCAAAGTGGTTGGAAAAATTTTATGAGATGGCTTTATTTTCAATGGTTTAGGAGTTATAATGGATTTAGAGAATGGCTTTTTTACTGTG # Right flank : AAATGCACACCTAATAAAAGGAAGTGCATTTCATTAAATACATCTCTAAATTTAGCATATATAATTTAATATTTTTATATAAACAATGACCATAGCCAAGTTAATTTTTTAGGTATTCCTATAGAAATTGTTATAAAAATTGACTTTATCAATTTTAAAATTTCAACTGTATAATCTCTATATTTTATGATATACTATTAGTAATAAGAGGGTGGATTACGAATTTAGTCTGCTTTATATTTGTATAAGTTTTAGTAAATAATAGATAGCCTTTGCGATAGCCTATCTATTATTTTTTTTGGAATTATTTATGTTTACTTTAGTATCAGATGATATTTCATCAGGTCTCAAAGTAATTTTATTATCAATTTTTATATCTGACTTTTTGTTAGATAGTGCTACTATAACTATAGCAGTTATTGAAAATAAACCAAAGAACAATAATAAATATTCTTCTATCATAAATTACCACCTCTTCTTCATGCGCAGACATTATTAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 31003-31756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTER01000009.1 Clostridium tyrobutyricum strain FAM22552 scaffold0009, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31003 30 100.0 36 .............................. AATATCCAACTTTCAAATTTCTCTGCTCCAGGTAAT 31069 30 100.0 35 .............................. GCAAAACACAATACCAGACTTAGGAATATAGGAGG 31134 30 100.0 36 .............................. TTTTAGTAATTGCCAATTAAAAAAGTCTTATACATA 31200 30 100.0 37 .............................. AAACCTACTGGCACAGTGTTAGAACCTGGTTGCATAG 31267 30 100.0 37 .............................. ATTATCTACCTCAAAACTTATAGAAGAACTTAATAGT 31334 30 100.0 36 .............................. GAGGCTACAATATTGCAAGAAAATTCTTGATGATAC 31400 30 100.0 35 .............................. TGATAAAATGAGGTGTTTTAAATGGACACAGCAAA 31465 30 100.0 34 .............................. GGTGTTGAAGATTATAAAAAAGTCTATCCAGGAA 31529 30 100.0 35 .............................. CCATCAAGAGTATTTAGGGATGAAGTTGGTGCACA 31594 30 100.0 35 .............................. AACATGACAATATCATGTAATACAGCTTTATATGC 31659 30 100.0 35 .............................. CCCATAGAAGCTCTATACTTGCCCATATATCACCT 31724 30 80.0 0 ............A..TT..AA....A.... | TT,A [31738,31744] ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.3 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ATTTAGTTTGAAAAATATGATATAGTATGGAGGATTTTAATGGGAAAAAATTTTAATTTTAATTATGCTTTTGTATTTTATGATGTAAATGAAAAAAGAGTAAATAAGATATTTAAAATATGTAAAAAGTATTTCCACCATCATCAAAATTCTGTTTTTAGAGGATCTATAACTCCATCTAAATTAATAAAATTAAAAAGTGAATTAAATAAGATCGTAGCAGATAAGGATTTTGTCACAATCATAAAACTTATAAATGATAGTTGCTTTGAGGAGGAAACTTTAGGTATAAATGATAAAAATACTGAAAACTTGATACTTTGAATTTTCCAACCTGTTTTCTATTTAGAATCACTTCAATTTATTTAGAATCAATGGGTTACGTTATTTCTTATAAAATATATGCATAATAAAAATTGGTTGGAAAAAATTCAGCGAAAACCTTTATTTATATGCTTTCAAAGCTTATAATGAAATTAAAGAATGGCTATTTTACACAG # Right flank : TCAAACATTTTAATTAAAGAGACAATTATTATAAATAAATTGGTATAGAATTATATTGAATAAATCTATACCAATTTTTAATTTGATATCAAGCCTTTGTTAAAATATCTGTTAAACCCAATTTTTCTATTCTCTTTTTTATCTCATTTTTATCTGTAGTATATAGTCCCTTTTCTTTCATTCTGTTAAAATACTCTGCACCTGCAAAAGTGTATCTGTTTTTTCTACCCTCTGCAGTTTTAATTTTGTAATTGGCATAGCTTATTATATCTCCAATGGCAGTTTCAGTTGGAAGTACCAGCTCAGGTCTGCCGAGAGCATATCTTACTGCATTATGCCCTGCAAGAGAACCTGTACATATGGCTTCTGTATGACCTACGAATAAACCGCTTTTTTCTCCACCACAGAATAGGTTATCTACTCCTCGTACATGTAGATCATTAGAAACAGGGGCTACAGAAAGATATCTTATAGAATTTCCCTTGCCACCAGAGTAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //