Array 1 92-1218 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESC01000335.1 Escherichia coli strain KCJK8916 NODE_336_length_1227_cov_3.124545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 153 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 214 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 275 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 336 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 397 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 458 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 519 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 580 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 641 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 702 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 763 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 824 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 885 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 946 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 1007 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1068 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1129 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAG 1190 29 89.7 0 AA..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48881-48302 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESC01000006.1 Escherichia coli strain KCJK8916 NODE_6_length_57581_cov_4.869983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48880 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 48819 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 48758 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 48697 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 48636 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 48575 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 48513 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 48452 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 48391 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 48330 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //