Array 1 10633-12405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYOG01000005.1 Escherichia coli strain T0143A.F-13 NODE_5_length_269793_cov_64.8949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10633 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 10693 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 10753 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 10813 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 10873 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 10933 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 10993 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 11053 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 11113 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 11173 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 11233 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 11293 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 11353 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 11413 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 11474 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 11534 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 11594 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 11654 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 11714 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 11774 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 11834 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 11894 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 11954 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 12014 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 12074 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 12136 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 12196 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 12256 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 12316 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 12376 28 85.7 0 ....................A...C.CT | T,C [12396,12400] ========== ====== ====== ====== ============================ ================================== ================== 30 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 21464-22072 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYOG01000005.1 Escherichia coli strain T0143A.F-13 NODE_5_length_269793_cov_64.8949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 21464 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 21524 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 21585 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 21645 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 21705 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 21765 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 21825 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 21886 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 21946 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 22045 27 85.7 0 ...G...A...............-C... | T [22065] ========== ====== ====== ====== ============================ ======================================================================= ================== 10 28 98.6 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //