Array 1 1685-2184 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAP01000049.1 Ligilactobacillus agilis strain SN811 sequence49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1685 30 100.0 36 .............................. GTAACCCTTGTGGCTCTAAGGATTACAGGTGTCCCA 1751 30 100.0 37 .............................. ACAAGAATATAGCGAGCTGTGCTCTAAGCGGTAGCGT 1818 30 100.0 36 .............................. ATCTCTATCAAGTTCTTTTAGATACAAATCAAGCTC 1884 30 100.0 39 .............................. AAAACAGGCGCTAAAGTAGCCGATTGGCAAGGGGCAAGC 1953 30 100.0 36 .............................. TTCGTTTGTTCGTAAAGAATTTGTGCAAAAAATGTA 2019 30 100.0 37 .............................. TAGATATTAATAAATCATGGAATGAGACCCTAAGAGA 2086 30 100.0 39 .............................. ACCAGTGTGCCAAGTAATCAAATATTTAATTTTTGTCCC 2155 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.6 37 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACTAGTAAAGTTGGGTATACCGAAACTAGGGCATCTAAGTGACGTAAATTTGTGATTTATTCTTTTCAATAGAGCCATTTGAGTATTTAGCAAATTTAGGATTAGCTGCGTTCAAAACATGTTTCTCTATCGTTAAGATATTTAATATTTGAATTAAGTGATTATTATCGATGTTCTTAATGTTTTTAGGATAAGCATCGTCACGTTTCATAGCTCACTGGACTTTTTTCATAAGAGATTCTAGCTGCAAAATTGTTTGTACCTGGAATGTTGTGGTGAAGTGCATTTTTTACTAATTACATTTGGTTATAGAGTGCATACATCTGTCGACCGAAGGTAAAGTAAAATAGTACGGGTATCGACAGACGATAAAAAGGTTAATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATATATGTGAAGACTAGTTGATAGTACAGGGTTTTGGGAGTGCAGA # Right flank : GATATTAGGTGCCTCTACTTGAGAATACTGCTATAAATATAACCAGCCTATGATTGAATGCTCACGTTTCAATCATAGGCTGGTTTAGTTTAAGCTAGTTATCGTTGTGATAGTAGTTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATCCTCGTCTGTCACCTTAACTTCCTTGCAACGGTGCTTAGTAATGAAGCAGAGTTCAGGCATTTTTAACAAGTCCAAGGTGAAATCGTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCAGGAAGCAGGTTTTCATCTGCTGGGTCCAACCCGACTCTGTCAGCCAAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 6413-6774 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAP01000049.1 Ligilactobacillus agilis strain SN811 sequence49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6413 30 100.0 36 .............................. AAGACCCACTACGGAATTTGCTAATATTCAATATTG 6479 30 96.7 37 ....................A......... ACGATAAGGTATACTTGCTTTTTACTCTGCTAAGCTC 6546 30 100.0 36 .............................. GTGAACGTTAAATACGTTTTTTACACAAGCTCTGGA 6612 30 100.0 36 .............................. GTACTCTCCTTTTTATGAATAATATGTTATAGTTTA 6678 30 96.7 35 ...............G.............. GTTGCTGAAATTACTTTAAGTGCAATGAGTTTTGC 6743 30 96.7 0 .................A............ | CT [6770] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.4 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AAAGTGGATCCATATAAAACTAGCCAAGTAGAATATGGAACTGAATATGAGGAAAAGCACGAGTTAAGAGCGACTAATAAAGACGGTAAACGCATATATGTTTCAGCATATACTGGTAAAGAAGTAGATAGAGATTATAACGCAGCCTTAAACATTAAAGAGTGGGGCTTACACCCAGAAAAACATGTAAAATTAAGAGATTGTCCTAAATTAAACGCAGGTAACTTGGTAGAAATAATTTAAAAAAGAGTTTTTTAGGAAACGGAACCAAATCCTACCGAACTAATAGCACAAAATTATGCGTATCACCCTGAGCGAGTCAAAACGGGTGCGATAATTAGTGAATATTATATATTTAGCATAATGGCGGTATTTCCAGTCATTATAACTAGGTTCGGAGCGTGTATGGCTTTTTAATGTACACGTAATGTAATCGCGTGACGCGATTCCTGCGATTTTAATCGTAGGTAGTTCAAAGTACAGAGATTTTAAAGGGTAGT # Right flank : TTGAAGAAGTTGAGTATTATGTATGGAGAATTTAAAAAAGACATGGGTGGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAGGAATTATAAATCATGATGGTGGACCTAATCATATGACACTAGAAGAAGTCAAAATTTCAATCAAAGTAAAAGCTGAAAAAATAGCGGCCCAACCACAGGTGAGTATGGTTGAGCCGCTATTATTACATGTGGAAGTAAATAACGGTTGTTATTACTGCCAGAGTAAAGCTACTAAGAGTTAAGATCAAGCCGGGCCAAGCGGGACCAATCCGGTTCCAAAAGTTACGTCCGCATAAAAAAGCGGTCAAATAGGCGGCGAGAGCAAAAACTAAGTAGACTAGTTTTAGGGGACTAAAGAAGATTAGGCAAGCCAAAGCTATCAATAAAAGGAGTATCCGTGGGTTTTGGTACCAAAGTCTG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2063-1788 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAP01000062.1 Ligilactobacillus agilis strain SN811 sequence62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2062 30 100.0 32 .............................. TGATTCATTCGCTCAATACGCAGAATTGATTG 2000 30 100.0 31 .............................. ATTTATTAAAAAACAACTGTTCAAAGAACAG 1939 30 100.0 31 .............................. GAAGGGGAAGATTTAAAGTGCATCGTCCGTT 1878 30 100.0 31 .............................. TCCAAGTTGTCTGGAAACTGTAAATCGAACT 1817 30 80.0 0 ..............G.......C...ATGA | ========== ====== ====== ====== ============================== ================================ ================== 5 30 96.0 32 CTTCTCCCCACACTAGTGGGGGTAATCCTT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAGGAAAATCAATTGTTGTGGGCTACAATGTCAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTCACCCGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAATTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCTCATAATTCTTTGTCCGATTCTATAGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACTGGTTTATCAACGTTTTTTTAGT # Right flank : ATTAAGCCAATAATTCATTGGTAAACATGCCATAATGAAATGTATGTAATTATTTTCCTAATTCCCTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTCACCAATACATAAGTTCTATTTCTAGGACTAAAAACAGAACTAGCAAATGGAGACTAGCCACTTGCATCATGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTGGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAATTGATGGAAATAATATCAGTAGCGAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTGAAAGACGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTACTGTGATGGGTTAGATGTAATTGAGGAATTA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 2182-1488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAP01000065.1 Ligilactobacillus agilis strain SN811 sequence65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2181 29 100.0 36 ............................. GGGGGGTTAATCCCAACGCTCGTCGTTCCATTTTGG 2116 29 100.0 35 ............................. ACAGCTGGATTGGTTTTAGTATATTGCTGCGAACC 2052 29 100.0 39 ............................. ACCTTCGAAAGATATTTAAACGTATTCCCGGACGATGAA 1984 29 100.0 39 ............................. GCAGTTTTGAAAGGCAAGGATATTGTCGTATTCGTTCGC 1916 29 93.1 36 ...T...................A..... GATATTTTTTCAATCTGGTAATCGGTTAAGTTTTCG 1851 29 96.6 36 ................T............ TTCGGAACATGGTAAGCGCACCAGGATTCTAAGCAA T [1848] 1785 29 93.1 38 ...T............T............ TCAGCAATCAGTTTACCGTCAGCATTATAAGCCTTAAG T [1780] 1717 29 96.6 36 ................T............ AAGTGCTACATGGTCGTGCCGGCGCAGACAATTAAA T [1714] 1651 29 96.6 37 ................T............ GTAAATTCAACGGTTAACCTGTGACCCTTGAAACTTT T [1648] 1584 29 93.1 35 ......................CA..... CAATAATTCTTGTTTTTGTGAATTATTGTAAGAGT T,T [1569,1581] 1518 29 93.1 0 ............C.......G........ | T,T [1508,1515] ========== ====== ====== ====== ============================= ======================================= ================== 11 29 96.6 37 GATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTTATGAATGATGTCTGGGAGTTGATAAAGAAGTATGCTGGTCAGTTATCATGCCTTCTAAGCATGTGTATATTGTTTGTGGTAACACTGATTTACGTAAAGGAATTTTTGATTGCCGATAACTTTGGTTTAGATTTTTATGATGATTCCTTGTTTTGTAGACGGAGAAATGATAGGTTTAAGGTACTTTACTGGGACAGTGAAGGGTTCATACTACTTTACAAGCGGTTTGATAATGGACGTTTAACCTGGTCTCGAACTAGCGAAGAGATAACGTTCTGTTATGGAGTGTTTACGGTTTTATTAGCTATAAGGTGTATATATCTGTCGACCGAAGGTAAGGTAAAATAGTACTGGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAATTGGGGATGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGCACAGGGTTTTGGTAGTGCAGG # Right flank : AGAGGTGACTCTTAGATTCTAATGCTATTGTTGATGTGTCATTGGCTTTGGAGGTGAGCCATCCACTAGAAGCTAAAAAGTTGGAGTAGATTTAAGGTTTGGTGTAAGCATTGGCAAGTAGCTGGTGCTTTTTAAGTAAGCTAAAGATCGTTATTCACATTTTGATTGTGAGTTTGCGATCTTTTTTATTGATGATGTCTTACTATTAAGTGATTATCACTGTTCTTTATTGCATTTATATATTAATTAAAATTATATTAACTATACAATATTTCACAAACACAAGAAATATTTGTGAAGATGATATATTTTTTATTAATAAATAGTTGAATTTTCTCTAAGGTTATATTATATTAGTGGTGATTAATTGAACGATGAATAGGAGGAAACCGTAAAGGTTAGTAATATTTATTGAAGCTAATGTTTCGACGTACAAGGAATTTTTAAAAAGCAAGAGTATGGGGCAACGGATTTGTGTTTCTTGACTCTGTTGTCCCCGT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : GATCTATTTAACTTAATAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //