Array 1 418076-417799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBJK010000002.1 Bacteroides uniformis strain PtFD3Pch2 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 418075 47 100.0 30 ............................................... GGAAAGAATTCAGACCGTCCTGCAGAAACT 417998 47 100.0 29 ............................................... GTGTTGCTTGATGGTAATTACCTCACAGA 417922 47 100.0 30 ............................................... TAATACCGGTACCTACGTCAGCGCTCCCTC 417845 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTGATTGGTAGTAAGAGTGAAGAAAAAACAGTTTTTCATCTTCACGATAAAGCTTTCGTTTTGAAGTCATAATAGTAACACATTTATTAGTTTGTAAATGTGTCTACCTATATCAGGATAAGACAATTCACTATCTTTGGAAAACAAATACACACAGACACGCACACAC # Right flank : ATATTTTGCGGAAGAACGGGGAAAAGGACGTTGTGATTTGCTTTCATTTTAGTATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATAAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGTTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2004069-2002945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBJK010000002.1 Bacteroides uniformis strain PtFD3Pch2 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2004068 47 97.9 30 ...A........................................... GTGTAAAGGCATGGGAAGACGAGTTAACAC 2003991 47 100.0 30 ............................................... TACTATGTGATAGTCTTTCCTTTTCACAAT 2003914 47 100.0 30 ............................................... TACTATGTGATAGTCTTTCCTTTTCACAAT 2003837 47 100.0 30 ............................................... ATTTTAATGATGATTCATATAAAAACTTTA 2003760 47 100.0 30 ............................................... GAGCCGTCTGACCTCCAGCGGTTGTTACTT 2003683 47 100.0 30 ............................................... AGGTGTTGCAAAGAAGATTCTCAAAGACAA 2003606 47 100.0 30 ............................................... ATCAGCGTGTTAGCTTTCTTTCGCTTCTGC 2003529 47 100.0 30 ............................................... ATTTTGTATCCGGTCAAAATCGACCGTGCA 2003452 47 100.0 29 ............................................... GGAAAAACATGGGGAGAATGGTTACTTAT 2003376 47 100.0 30 ............................................... TTTCTATCCAAGTTCTGAACTGCATAAACC 2003299 47 100.0 30 ............................................... CAGAAAGGGAGCCTTGAGCATAAAGATTAG 2003222 47 100.0 30 ............................................... CGACTGCCACGCTGCCTATATTGATAGGGA 2003145 47 100.0 30 ............................................... GAAGCCTGAGAAGTTATACGGTAACTTACA 2003068 47 100.0 30 ............................................... ATCATTCAAAACGTTCCAAGGCCAGAAGTA 2002991 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAATAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //