Array 1 84243-85492 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZL01000018.1 Escherichia coli strain L935 NODE_21_length_247210_cov_23.737652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84243 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84304 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84365 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84426 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84487 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84548 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84609 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84670 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84731 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84792 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84853 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 84914 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 84975 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85036 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85097 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85158 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85219 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85280 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85342 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85403 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85464 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111042-111741 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZL01000018.1 Escherichia coli strain L935 NODE_21_length_247210_cov_23.737652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111042 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111103 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111164 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111225 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 111286 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 111347 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 111408 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 111469 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 111530 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 111591 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 111652 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 111713 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //