Array 1 991-783 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPO01000075.1 Vibrio cholerae strain A12JL4W21 NODE_102_length_3465_cov_22.773449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 990 28 100.0 32 ............................ TGCACTTTCCCGCAGGTGGTACACGCTTTATA 930 28 100.0 32 ............................ TTGTTGATACGGATGTTGTTCTCAGAGCTCTA 870 28 100.0 32 ............................ TTAATCGCAAGCCCGCCAAGCAGTTTCAAGGC 810 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCTGCACAGGCAGCTTAGAAA # Left flank : CGCATGTGGCATGACGAGCAAGTACAAGTAATGGGGTCTTTCCAAAAAGGGCAGCGATAGAGTTTTGTCTTATCAAAAATATCGTATATGGGCATGTTCTTTCTCTGACGTTTTGTAAGTTGCCCTATCATAACCTCAAAAGTTCACAGGCAAAAACTTGCCTAGTAGATATGCATCAATGTGAGCTATGAGGTTGAATTTACAGTGTAATGTGGTTCTAATTAGCACGCTCATAACAAACGCTTCAAGAGGGACTGTCAACGCATGGCATTTTCGGTTTGAGTGGGCATTTGTGGTTACGGTTGTTTAGTTAAGCCGTGCGGTAGCGTTGCCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTGAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTACCTCGTTTAAGATTCGCGCTATACCTAACGATCAAAGTTAATTTATATTAACCATGTCGCATAAAAAAGGTATGACTCAGATAGTTGTACGATATAATGCTGAGCACGTAATTCAGTTTAACTTATGGACTTGAGGTATTTGATGGCTGCAGAAATAATTAGCATGATCAACTGGAAAGGTGGTGTAGGTAAATCGACATTAAGCCTTCATTTAGGTGTTGGGCTTATGCGACGTAAAGAGGGTCCAAGCCGACCCAAAGTACTATTAATCGATTTAGACCCTCAATGTAATTTGTCTTACCTTGCTCTAGGGGTTAACAAATATGTTGATGCTGTCTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4082-3634 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPO01000027.1 Vibrio cholerae strain A12JL4W21 NODE_31_length_4697_cov_22.518843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4081 28 100.0 32 ............................ TGATTGAGTAGGCACTGTGTCTTGATGTATTC 4021 28 100.0 32 ............................ TCTCAGGGGGGATTGGGTTGTAGAGGGAGAGC 3961 28 100.0 32 ............................ ACCAAGCTGGATGAAACTGCAAGCGCTGGCTC 3901 28 100.0 32 ............................ AAGCGCTGAGTTCGGGCATGGATACCACAAAC 3841 28 100.0 32 ............................ AGATGGGCCGGAAAAAACAGCGGGATTACGAA 3781 28 100.0 32 ............................ TCGGTCTAGCACTTGCTGTCCCTTTGGCAAAC 3721 28 100.0 32 ............................ TGTCGATGGAGTTTCAATATACTCGGCAATGA 3661 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTGCTGGAAATTCAGAGAATTGCCTCAATCAATTTTTTGCCAAGCGCGAGGTTAGTGCTGCTGGCTCAATCAGTATTTTGATCACAGGTTTTTGTGCTTGAATTGCCAAAATTCGAAGTCTGTTTTTCAAATCTATGAGTCGTTTCAGTTTTTTAGTTCTTGGCTTTTGTTTGTGAATCAAAGCTGAGTTAATCCTTGTTTAGGTAAAACGTAAGTCATTGAAGCTTAAACATAACAAACGGTTCAAGAGGGACAGCCAACGCGCGGCATTTTTATCATGCGTTGGTTTTTGTGGTTGCGGTGTTATGCGGAAGCTTGGTAATGGCGTTGGCTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATAAAAATCAGCAGTTTGCCGTTGTCGATTCCTCTGGCATTTCGTTCAGGTATTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAGCAACAATGTGTCTGGCGTTGTAAATTCTGAGTGATTGCCTCATTGGGTTTTTGCGTCCACGCGAGGTGAGTTTTGCTCTCTCAAGTCGCTTTGAGCAATTTGGTGCCTTTACTTATGGGCTGAAAGTCTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTCATTGCCTCATTGAGTTGTTGTGCTCATGCGTGGTGAGTAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 493-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPO01000154.1 Vibrio cholerae strain A12JL4W21 NODE_255_length_510_cov_15.650980, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 492 28 100.0 32 ............................ GACAAGGCCGCACTCAACTTGTCCGGTCATAT 432 28 100.0 32 ............................ TAAATCGGGCACCACGATTGCAGAGCTAAACG 372 28 100.0 32 ............................ TGCTCACGTTCAACCGCATTTAGGCGCGCAAA 312 28 100.0 32 ............................ TTTAAATGGCAGCGTCTGCACAATATCTACCA 252 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGTGAAATGGAGGTAACATGGTAACTCGTGAAAGCATGAAGTCTTGGATAGTGGAGTGCCTTGAGTTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59592-58363 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPO01000017.1 Vibrio cholerae strain A12JL4W21 NODE_20_length_264423_cov_25.091194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59591 28 100.0 32 ............................ ATCATTCTCGAGAGCCGCAACCTTTGCAAGCT 59531 28 100.0 32 ............................ TTGCGTGTTGGTGCTAAAGCCTGCGTTTTTTG 59471 28 100.0 32 ............................ GTTTTTAATGGTCACACGAGAGTCTTTCATCG 59411 28 100.0 32 ............................ ATCCCCCATATCCGCTATCAAATGACAACTAC 59351 28 100.0 32 ............................ AGATTGTGCGCATAACGCCAGAGAAAATGACT 59291 28 100.0 32 ............................ CCGATTAACAACTTGAGAGAACAAATACGTCC 59231 28 100.0 32 ............................ TTGTTTTCTTCGATGTGCTTCTGGATGGATTC 59171 28 100.0 32 ............................ AGTCTGTAAATTATCTTTTGCCAATTGTAGGC 59111 28 100.0 32 ............................ TTGCGGCTTCTCGTTGCGGTTGATTTCAGCAC 59051 28 100.0 32 ............................ ATACGGTAAGGAACCAGTTTGATGCCGTCGTC 58991 28 100.0 32 ............................ ACGAATACGAATAAACGGTTCAAGGTCTTGGT 58931 28 100.0 32 ............................ AATCGGGAGAAATGATTATCACGCAAGACGGG 58871 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 58811 28 100.0 32 ............................ AAGCAGCAGACCGAGCAGCAGACCGAGCAGAC 58751 28 100.0 32 ............................ TCAACTGAATTGCTGCTTCATAGTTCGCTTCG 58691 28 100.0 32 ............................ GCCCTTCACGAACGGGTCGCCACACTTGCCGC 58631 28 100.0 32 ............................ TGGTCGATGTTAAAGCGATGGGATAAAAACTC 58571 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 58511 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 58451 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 58391 28 92.9 0 ......................G.A... | T [58371] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATTTTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGGAACTACGATGTGACGTTAGGAGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //