Array 1 562304-556954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT604072.1 Xanthomonas translucens pv. translucens DSM 18974 isolate peng1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 562303 31 100.0 34 ............................... CGCGTCTGCCGGGCGAACTCCGAAGTCATCGTGC 562238 31 100.0 34 ............................... CGCTTGTCCGCTAGCGCACCTTCCGAGAAGTAGG 562173 31 100.0 36 ............................... TGGTTGTCGTCCACCAGACGAAGCGTATCCGCAAGT 562106 31 100.0 34 ............................... TTAGCCGTCGATGTAGGGTGTCCGTATACGTTAC 562041 31 100.0 34 ............................... GGCAGTAACCTGCCGGGCGTGCGGCGCGATGCGC 561976 31 100.0 34 ............................... ATTTTAGAGCCTCCCGACAGTCAGAAACGAGCTT 561911 31 100.0 36 ............................... GCGCTCACAGTACACACACAAGGGATGCTGCATCAG 561844 31 100.0 34 ............................... CGCCGAGCGTTGACAAGGTCTCCAGGACCCGCCT 561779 31 100.0 35 ............................... TTTGCCGGCATTGGCGGGTGGTCACTCGCACTACA 561713 31 100.0 34 ............................... CGGAACCTTGGTCAATGCTCGCAGCGCCATGTCA 561648 31 100.0 35 ............................... TTCACTGCCACCTCGGCGCGCAAGCGCGCCGGGGC 561582 31 100.0 36 ............................... CAGATCAGTGAGTACAAGGTCGACCCAAGGCCCGAG 561515 31 100.0 35 ............................... TTCACGAAATCATCCTCGTTCTCGGTCGCGATCTC 561449 31 100.0 34 ............................... ACCGCTTCGGAGTACGCGGGGCGCAGCGAGCTAA 561384 31 100.0 34 ............................... CTACGTCCGGCAAGTACATATTCGCCTGCCGCGC 561319 31 100.0 35 ............................... TGTGGTCTTGCCTTCCGGGCCGACGGCGGCCACAC 561253 31 100.0 35 ............................... TCTTTGGCGGAGCCGTCGGCCAATACGGCGTCGGG 561187 31 100.0 33 ............................... ATTGCTCCGCTGTCGCAACAACGCGGCAATGTC 561123 31 100.0 34 ............................... TTAATCCGCGCGCCAACCAGTGCCACCACACCAA 561058 31 100.0 34 ............................... ATGCGCTGCGCTCCTGGTGGTCCTGGTGGAAATC 560993 31 100.0 35 ............................... CGTCGCTATGAAGCCGCGCAGGTCTACATCTTCGA 560927 31 100.0 35 ............................... TTGAGCGCTCTGGTGACTTTGCTTTAAACCGTAGG 560861 31 100.0 33 ............................... AAGTACCTCTGTGCGCTCGACAACCATTGCAAA 560797 31 100.0 35 ............................... GTACATCCTGACCCCAAGGAGCACGCCATCTCGCA 560731 31 100.0 35 ............................... TAGACCCGGCACTGCGTGTGAAGCTCTGGGCGCTT 560665 31 100.0 35 ............................... ATCATCACGGGCGGCAAGGACAACGATGCGTCGCT 560599 31 100.0 36 ............................... AGGTCGTCTGCAGCCTTGTAGAGCGGCGACTCGCGC 560532 31 100.0 35 ............................... CGGCATAGTTGCCCCGCAGCTGCACTGCAAGCGTC 560466 31 100.0 35 ............................... CAGCTCCCGCTCCGCTGCGCTCTGACGTGCTTCCT 560400 31 100.0 34 ............................... TTCGGTACCGCCAAGCGCGGGACTACTGCCGGGC 560335 31 100.0 34 ............................... GCACCAAAGCTGCCCGGGATGGTGTCACCGACCG 560270 31 100.0 35 ............................... ACCTTGACGCCGTGGCTGGTCCGAATCGAGCAGGG 560204 31 100.0 35 ............................... TGTACGAACACCCCGAGGACATGGTGGCTGACGGC 560138 31 100.0 35 ............................... CCGCTCATCCGCGTAGATATCCGTGCGGAGGTGGT 560072 31 100.0 33 ............................... TTGAGCGCTCTGGTGACTTTGCTTTAAACCGTA 560008 31 100.0 34 ............................... AGGGCACCGTGGAAGCCATCGAGAACCTGCCCAG 559943 31 100.0 33 ............................... TGGCTCGGCTGGTATCACTACCTGGCCGCACTC 559879 31 100.0 35 ............................... AGTACGTATGTGGGCGACGTAGGGCACGCGATGGT 559813 31 100.0 34 ............................... TCTTGTTCGGAGTCCATTGTCGCGGACTACCTGT 559748 31 100.0 35 ............................... CGCACCAGCGGCATGGGCGCGCAGGGTGTAGGCAC 559682 31 100.0 33 ............................... ACTGCACAGTAGCGTCGTCTTGCCCGCATCCGG 559618 31 100.0 35 ............................... CGTTCACGGCTGCACCTCACACCGCATGCTGAACC 559552 31 100.0 34 ............................... TTGCTTCGCTGCGTTTGTTTCTGCATATTCAAGG 559487 31 100.0 35 ............................... ATGTCATTCGTCTCTTTGTTGGGTTTGGGTCAGGC 559421 31 100.0 36 ............................... AACAACTTACGCACCCGGTAGGGTGCGTATGGTGTA 559354 31 100.0 36 ............................... CTATCGGTAGATCCGCGCAGATATGGGTTGTCCCAT 559287 31 100.0 35 ............................... TTCAACTCGCTACCCTTGGCCTTGCGGATGCGCTC 559221 31 100.0 33 ............................... CGTTGATACGTTCGTGCGGGGCAACAATTTCAG 559157 31 100.0 34 ............................... AGCAAATGACGGTGCAGTCCAACGATGCAGGGTC 559092 31 100.0 34 ............................... TTAAACTCACCCTGAGGCACACCGCTATGCAGTC 559027 31 100.0 34 ............................... CAGAACCGCAACTGCCGATCTGCAGCATTACACA 558962 31 100.0 37 ............................... TCGGGTTGCGCTACCCACCGCACCCTCACTTGCTGAC 558894 31 100.0 35 ............................... ACGCGCACGCGCTGCCCGGCGTAGAAATCGGCACG 558828 31 100.0 36 ............................... AGTTCGTGCTTGTTTGCCGTGCCGATCAACACGAAG 558761 31 100.0 34 ............................... TTGTTGCAGTCGCACGGCACGACGCTGGCCACCC 558696 31 100.0 36 ............................... CCGGCATCCGGTATCGTGCTGAACCCGGCTGATTGG 558629 31 100.0 33 ............................... TTCCGCGCCGCGTCCACCTCGGCCGCCTGCTTC 558565 31 100.0 34 ............................... TGCCCAGGACCCTCGACGTACAGCACCCCCAAAC 558500 31 100.0 34 ............................... TGCACGACGAGTTCCTGGCTCGGTGCCAGGACCA 558435 31 100.0 34 ............................... TTCAACAACTTCTCTGGCACTGCGATCTTGTCGG 558370 31 100.0 34 ............................... GGTCTTGCTGGCGTGCCAGTTGCTGGTTGAAGCA 558305 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 558239 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 558173 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 558107 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 558042 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 557978 31 100.0 37 ............................... TTGAGCCCCACGATCGCCTCGGCGGTGCGTGTGAAAG 557910 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 557844 31 100.0 35 ............................... TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 557778 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 557713 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 557647 31 100.0 36 ............................... TGCTCTAGTCTGTCTTTATTTTTCAGGTATAAAAAG 557580 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 557514 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 557448 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 557383 31 100.0 36 ............................... TTGAGTTTCAGCTCTGCATCGACGGCCCGGATGCGG 557316 31 96.8 36 ....................C.......... CGCACGTTCGACGGCCCCAGGTGGAGGAACGCCCCG 557249 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 557184 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 557119 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 557052 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 556988 31 93.5 0 ...............C.........C..... | G,G,G,T [556958,556978,556980,556984] ========== ====== ====== ====== =============================== ===================================== ================== 82 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCTAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCACCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //