Array 1 352545-353122 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWAZ01000002.1 Escherichia coli strain C104 C104_NODE_2_length_505117_cov_80.3598_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 352545 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 352606 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 352667 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 352728 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 352789 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 352850 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 352911 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 352972 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 353033 29 100.0 32 ............................. GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 353094 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 378821-380070 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWAZ01000002.1 Escherichia coli strain C104 C104_NODE_2_length_505117_cov_80.3598_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 378821 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 378882 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 378943 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 379004 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 379065 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 379126 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 379187 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 379248 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 379309 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 379370 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 379431 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 379493 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 379554 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 379615 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 379676 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 379737 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 379798 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 379859 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 379920 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 379981 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 380042 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //