Array 1 337357-337185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRN010000002.1 Nonomuraea harbinensis strain CGMCC 4.7106 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================== ================== 337356 23 95.7 31 ........G.............. GCCGGGGTCCTGCCCGTACGAGGAGTCGTGC 337321 23 100.0 31 ....................... CGAGGGATCCTGCCGGTAATGGGGATCCTGG 337267 23 87.0 37 ................TGG.... ACCGGGGTCCTTGGCGTAACCGGGGTCTTGGCTGTGA 337207 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================== ================== 4 23 95.7 33 CCGTAGCCCGGGTCCTGCCCGTA # Left flank : GCGGCCGAAATCGCTGCGAACCTGTGTTTAGGATCGCGGACATGGCTATGTGCGAACATCTGATTCAGGCGGACGATCCCGAGGCGCGCACGCCCGAGGGATGCGAGGAATGTCTGGCCGAGGGCGGCCGGTGGGTGCACCTGCGCCGCTGCCTCGACTGCGGCCACATCGGCTGCTGCGACTCGTCCCCGGCCAAGCACGCCACCGCCCACTTCCACGGCACCGGTCACCCGGTGGTGCAGTCGTTCGAGCGGGGTGAGACCTGGCGCTGGTGCTACGCCGACAGCCAGATGGGCTGACGCCGGGCGGTCACCACTCGCGGCGGTCGCGCGGGTCGTCGTACTGCTGGTCCGGGCGCAGGCGCTCGCCGGTCGAGAACAGCGGCTCACCGAGGTACGGGCGAGTCCTGTCGGGCTCCTGCTGGCCCATCGACAGCAGCGGGTCGACCGGGTTGGGGGCGCCGCCGCCGTAACGCTCCTGCCCGTAGGCGGCGTTCTGGC # Right flank : GGAGGGGTCCTGGCCGTACGTGGGCTCCTGGCCGCGGAACGGGTCCTGGCGGCGGCCGGCGCCCGGGATGCCGTGCATGGGCGTGCCCAGGCCGGCGCCGCCGCTGGGCGAGGTGCGCGGCTGCGCGGGCGGTGCTGGTGGTGCGGCCTGCTGCTGGTACTGGCCGCCGCCGTAGGAGTCGCCGCGCTGCTCGTAGGCGGGCTCGGCGGGGCGGGCCTGCGACGGGAAGCCGAGCGGGTCGGTGTGCGGGGGCTGGCCGCCGGGCAGCTGGTAGGCCGGCTCGTCGGCGTACTGCGGGCCGGCGAACGGCTGGGCGTCGTGCTGCACGTACTGCGGGCCCGAGTAGGGGTCGCGGTAGCCGGCGTCGACGGCGTACTGGGGGCCGGTGAACGGGTCGTTCGCCTGCTCGGCGTACTGCGGGCCGGCGAAGGGCTGGGCGTGCGGCGGGGTGGTCTCGGCGCGCGAGGCGACCAGCTTGTCCTGGTGGTTGAGGTTGCCGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTAGCCCGGGTCCTGCCCGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 77543-76049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRN010000024.1 Nonomuraea harbinensis strain CGMCC 4.7106 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77542 29 100.0 32 ............................. GTGTCAACGATCGCCGGCGGCGGCCGGCCGGT 77481 29 100.0 32 ............................. TCACGGCCCAGTCGAACGAGCGGGTCGCGGAG 77420 29 100.0 32 ............................. GATCACGCGCGGGTCCTGGCGGACATGGACGC 77359 29 96.6 33 ............................A GCGGGGTCACCAGCTGGCCGAGGCGGTCGAGCG 77297 29 100.0 32 ............................. GTCCCGGCGCGGAGCATGTACGCCACGTCCCC 77236 29 100.0 32 ............................. GACTGATTGCTACCGAGGTTGGGATAGGCTCT 77175 29 100.0 32 ............................. AACGCGTCCTGCACCGACGAGCGCAGGGCGTC 77114 29 100.0 32 ............................. CTTGTCGCCCGGACGGCGGGCGATCATGCGGA 77053 29 100.0 32 ............................. CGGTCGGCGTTCGGCTGGGGCGCCACCGGGGC 76992 29 100.0 32 ............................. CCGAGCTTGGCGTCGGGCTCTGGGGGTGCGAT 76931 29 100.0 32 ............................. GAACGCGGCGAGGCTGACCTTCTTCTCGGCGT 76870 29 100.0 32 ............................. CGGGTGCAGAAGCTCGAAGCGGAGATGGCCCA 76809 29 100.0 32 ............................. TGGGCCCAGGGCTCCTACGGAGGTCTTTCCTT 76748 29 100.0 32 ............................. CCTGGAACACCCAGTACAACACCCTGGAGATG 76687 29 96.6 32 ............................C TGCTCCAGGCGGGCGACGGCGGGTGGCCTTCC 76626 29 100.0 32 ............................. CAGGTGGCCCGCCTGTCGCGTCAGGTGCGGGA 76565 29 100.0 32 ............................. AGGTGTGTGACGCGCGACCGACTGTTAGGTTT 76504 29 100.0 32 ............................. TATGTGCCGCCCTCGGAGGCGAGGTCGTACGC 76443 28 96.6 33 ..............-.............. GTCTCCCGCCGCACCCCCCGCCTGGCTGCTCTC 76382 29 100.0 32 ............................. GATGCGATGGTTCACCAGTCGGGCGCCGTGAC 76321 29 100.0 32 ............................. CCACCGCCCGAGGTGATGATCCTCGCCCCGGA 76260 29 100.0 32 ............................. CCACCGCCCGAGGTGATGATCCTCGCCCCGGA 76199 29 100.0 32 ............................. GTGTCCTACACGCTGATCGGGACGGGGCACAT 76138 29 100.0 32 ............................. CTGTGGACCGGGGCCGCCCTGTCCCGCGAAGA 76077 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 CCGTTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TCGGTTCTCTTCCGGCCGGGGTCAACTATGGCGACGAAGCCGCCGGCGACGTCGAGATTCCGTGGTAGCAGTAGCTGGTGATCCTGGCCGGAAGAGGACGTGACTCATGGCATCCATGATCGTCATCTCGACGACCGCCGTCCCCGATCACGTACGCGGCGCCTTGTCACGCTGGCTCGTCGAACCCGCGCCGGGGCTGTACGTGGGGACAGTCTCAGCTCGAGTCCGTGACCAGCTCTGGTCAGCCGTCAGCCAGTGCATCGCCGATGGCGCCGCTGTGTGCCTGCACCCGGACGACAACGAGCAGGGGTTCACCATCCGCACTGCGGGCGAGCGCCGTCGCCATGTCACAGACTTCGACGGCCTCCAGCTCATTCGCTTCCTTCCCGAGCTTCCTCCTCAACCATGACCGCCAGTACGAGGTCGCCTGCCATCAACGCCGACAAACACCGACACGCTAGAAAGGCCCAGGTCACCGGTCTTTGAGCAGGTCAGCAAGT # Right flank : CCAGACCGGAGATCTCGACTGCGGTCTCGGGCTCGTTTCGCGAGGCCGGTGGTGATACGAGTTCTGATACGTACCATGATCGATGAGTATGGGTCCGAATTACGTTGGCTTACCCGCCGAGCGGCGCGGTCGCGTATTCCTCCCACTCGTACATACGCCTGTCCCTGCCAAGGACGATCAGCTCCGCCTTGCGGACGAGCGTGAGCGCCGGCACGGCCTGCACCGTGTCGAGCGCATCGGCAACAGGTTGGGGCGGCCTCTGCGCGTTGCTGTAGGCGATGGTCACGTGTCCGGCGAACGCTTCGGCAGGCTCCGGCACGGCGGGCCACACGGAGGCGATGGCGTCGCGGATCGCGTTCCGCACCGCGACGACGGGCTGCTGCGGGTGGGCCTCCCACCGGATCGCCTCTGGGGTGATCCTGGGCCGGTCCAGCGTGATCGTGAAGGGCGGCACCGTGGCCAGCCGGGCGCGGGCGGCGTCCACGATGGCACGCACATCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86561-88551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRN010000024.1 Nonomuraea harbinensis strain CGMCC 4.7106 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 86561 29 100.0 32 ............................. CCAACGTATATACGAGCGTTGTGGCGACGCTC 86622 29 100.0 32 ............................. TCGGCGCCACCCGCCGCGGCGGCCGCGTCCAG 86683 29 100.0 32 ............................. GCCCAGGAGGCACTGAACCGGGCCCGTGCGGA 86744 29 100.0 32 ............................. GTGATCAAGCCCGCCGTGTCGGCGCTGTGGAC 86805 29 100.0 32 ............................. TTCACGCCGCCGGCGATCGGCTCGCGGACGGA 86866 29 100.0 32 ............................. CTGATCCTTCTCGTGAGGATCGATGATGTCGG 86927 29 100.0 32 ............................. CCGCAGGCCGGGTACGTGGTGCGGGCGTGGGA 86988 29 100.0 32 ............................. GGCTGGGACCGGCCGCTGCAGTTCGCTGGTGG 87049 29 100.0 32 ............................. GAGGCTCTCCGGCGTCTAGGCCGGAAGTATGG 87110 29 100.0 32 ............................. CGTCCATACCGGCTCCTGAGGCATCGGGAGCG 87171 29 100.0 32 ............................. GGATCATGATGCCCGCGGCTTGATATGCCTCG 87232 29 89.7 32 ..........T....C............T CGGGCACGCCGAGGTGTTCGAGGCCGTCTGGA 87293 29 100.0 32 ............................. CCAAACGATAAGAATCCGCTTACGCGGGTGTG 87354 29 96.6 32 ...........................T. ACCCGGGCCTTGCCCTTGGCCTCTGAATGGGC 87415 29 100.0 32 ............................. AGGAGGTGAACGTGCACGTCCACGTGGGAGTG 87476 29 100.0 47 ............................. GGGACGGGCTGTTGGTTGGGGTTGCGGCTGTAGGCCTCCAGGACGGC 87552 29 96.6 32 ............................C ACGGCAGCAACGTCATCGGGGCGCTCGAACGG 87613 29 100.0 32 ............................. CTGATGATGGCCGCGGAGCTGACGCTGCAGTT 87674 29 96.6 32 .............T............... CCGCCCGGTGATCCGCTCTCCCGGGTGCCCGA 87735 29 100.0 32 ............................. GCGGCCGAGAATTCGACCTCGGCTCAGGTCCT 87796 28 96.6 32 .....................-....... GCGAAGTACTACTGGGAGCTCCCGGCGGCCAG 87856 29 100.0 32 ............................. CGGAACGCGTGGCTCGGCGCGTTGATCGGCAC 87917 29 96.6 32 ........T.................... GTCACGTTCTGTCTCACCATCTCGGACATCTC 87978 29 100.0 32 ............................. CTGCGCGGGCTGAGCGAGCAGGTCCGCTCCAC 88039 29 100.0 32 ............................. ATCAACGCTCGCGACATCATCGTGCAGATCGA 88100 29 96.6 32 ..................A.......... CTGTGGATCAGGCCCCGGTACAGGAGGCACTG 88161 29 100.0 32 ............................. CCCGACGTATCCTGCAAGCCCAGCTAGGGAGA 88222 29 100.0 32 ............................. GTGAGCACCGCCCGCCAGCTGTTCCAGCAGAT 88283 29 100.0 32 ............................. TGCGACACGCTCGCGCCGGCGTCGTCCAGGAC 88344 29 96.6 32 ........................G.... CCCGTACGGCCGTCTTCCGTACGGACGCGCGT 88405 29 93.1 31 ..........T............A..... GTGCCGAGCGCTGACCCGTCGTCAGGACGTC 88465 28 93.1 32 .............T...-........... GGCCTGCCGCGTCCGTGGCCCCGCCGAAGGGA 88525 27 86.2 0 ...C.................--C..... | ========== ====== ====== ====== ============================= =============================================== ================== 33 29 98.1 32 GTGGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : ATTGAGCAGCATCCATGCTTTGAAAGCAGCCCATGCATTTGCCGATGTCGTGGAGCCCGGCCCAGAAAGCTACCAGGCGCCCGGCGGCGTCGACTGTAGTGCCTAGAGCTTCTGCTATCCGGTGTTGCAGGGTTGGGGAGAGATACTCCTGCCACAGAGTGCTCGCCATGGCAGCAGCATCGAGCAAGTGGCAGATAAGCGGGTAGGGTGTGGGTAGATTGCGTGATTTACCCCATATGAGCATGTCTACCGCTTCGTGCTCCACGTGCTCTAGATTCACCTATCTCCCCGGATGTCTGTTTATCTAATGAATTGTTGGCGGCAATGCGGAGGGAGCATACGGTACGAAGATAAGGTTCCGCTAGATGCAATCGGCCCCAGAGTGGAGCCTTCCTGTAGCGCGCCTGTCCGGCCCGCTACCCCTAGAGGTTGGCAAAGTGGCGACAAACACCGACATTCACATTCCTGCAGGTCGGGCTTATCCTTCCTGCTCAGGAAGT # Right flank : GGGATGGCAGAGGCCGAGCGTGCCGAACTCGCCCCCGACGCCCCGGCATTCCAGTGACATCCGTACCAAGCACACGCGAGTGGTGTTAGCCAAGGTAGGGCTGGTGGCCTCCTCGATGAGGACCTAGTAGCGGGCGTTGCAGCCGTCCACGTCGGTGTCGCCCTGGTGCCAGAAGCTGGAGCGCTGGTAGCCCACGGCTCTCCTCGTCCACGAGCAAGCTGGCGACCGCATCACGCAGGAGCACCGTCTGGGCTCGGGTGGACGACGTGGCTGCCGCTGTAGGTGCGGCGGCCGATGCCGGACTGAGCCCAATCAGCGGCGTCGCCAGGACCTGCAGTCAGGAGGGCGGCCGGGATGGTGCGGCGTAGGGGGAAGGCGCCGAGATCCTTCAACATTGAGCTACTCACCGTTATGATCGAACACGAACAGTAATAACACTTGGTTGAGTTCGCGCGCCACCGGCTCGGTGACAGCCTGGTAATGGCACTCAGGCTCGCGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //