Array 1 178711-177340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEB010000007.1 Bifidobacterium dentium strain 2078B Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178710 29 100.0 32 ............................. AACAAACCGTACCGTGCCCAAGCGAGCAGATA 178649 29 100.0 32 ............................. ATCACTCACCGTTGGAACCTCCTAGCCTCAGC 178588 29 100.0 32 ............................. TGAAACATACGATGCTAATTTTGCGGGTAATA 178527 29 100.0 32 ............................. TGATAGCATTATGCATTGCGGACGGGAATTTA 178466 29 100.0 32 ............................. ATTTTATGCAAATGTTGGCGCGTATCGCATTT 178405 29 100.0 32 ............................. GACCCTAATAGCGACTTTGTTGTCGGGCGCGT 178344 29 100.0 32 ............................. CGTTCATTTCCAGATAAAATGTATCCCAAAAG 178283 29 100.0 32 ............................. AATATAAACGTCTGAATACGAAAATTGAAAAT 178222 29 100.0 32 ............................. CAAACGTCTTGATATGACTAATATTGTCAAGC 178161 29 100.0 32 ............................. GCGCGATTGGCGGCTTCAGTCTGTTTCGTTTT 178100 29 100.0 32 ............................. CGTTCATTTCCAGATAAAATGTATCCCAAAAG 178039 29 100.0 32 ............................. TCAGCCGGCCCAGCGACCCTTCGGGCCACGCC 177978 29 100.0 32 ............................. ACGAAGCAATCGTCATTCTTGATTGCCTCATA 177917 29 100.0 32 ............................. GTCTTGAAGAGTCCGGTGATATCCGCGCTGTC 177856 29 100.0 32 ............................. ATTACCATCATCAGCCCTATCGAATACGGCAT 177795 29 100.0 32 ............................. CTCAACCTCCCCGAAATGCGGCAATCGCTCCG 177734 29 100.0 32 ............................. TAACTTGTAAGGGAGCTGCAATGTCAAATATG 177673 29 100.0 32 ............................. AAGGCCAGTGCTTCGTTCCAGCCGGTTGGTAT 177612 29 100.0 32 ............................. TGCTCACCATCATTCACGGTAATCTGCGGGTA 177551 29 100.0 32 ............................. CCGCATATGGCTTGGATCACGCCGCTCACGAT 177490 29 100.0 32 ............................. CGAGGGATTGTGCGGTGGCCCACGACAGCAAG 177429 29 100.0 32 ............................. GCGCAGGAAAACAATCCCGTCAACGGCGAGGA 177368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 ATGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : AACGGAGCGTGGTGTTCACCACGAACCTGGAGTTCGGGCGGTGGGGCGAGGTTTTCGGCGACGGCGACATGGCCGCCGCGGTCATCGACCGTATCGTGCACCACGGCAGGATCGTCAGGTTCCGTGGCGAGTCGTACCGCAACAGCCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACACT # Right flank : CAGTCAGGGAGAATCTATAGCAACAGTGGTTGTCTCAGGTCAACCGCCCCTAGTACTTGTCGAGGGACTCGAACCCTCACACCCCGAAAGGTAACGGTTTTTGAAACCGTCGCGTCTACCATTCCGCCACACAAGCATTATCAGAATAATATGGTAGAATCAGAAACCCTACCACAATAAAGGAGAACCCATGAGCCTGAAAAGCATGATCGAAAAACGCCACACCACGCAAACCCAACTGGCCAGAAAATCAGGCATACCGCAACAAACCATATCCGAATACGTGACAGGCAAACGCCCCGTAAGCAACATGACAGTCGGTACAGCCCTGAAACTCATGGAAGCCCTCAACACGAAGAAAATCCACGACCTCATGTAAGAGACAATCCAATCCCATCACATACACAACAGAAAAGAGATGGGATTGGACTACCCCTACAGGAACACACATGGCGATTAACGTCAGCCAGACGAGCGGATGATGAGAGATTCGAACTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5136-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEB010000008.1 Bifidobacterium dentium strain 2078B Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5135 29 100.0 32 ............................. AAGTGAAAGGAAAATGACATGGCAACCACCCA 5074 29 100.0 32 ............................. AGGGCGATGTTCTCCCCGATCAATCGTCTGGG 5013 29 100.0 32 ............................. GCGCGTTGGACGAGGTGGACCGGCGCGCCACG 4952 29 100.0 32 ............................. TCGCCAAAAAAACGTTGACAGTGACATCTACC 4891 29 100.0 32 ............................. CACAAACCAAACGAAAGGAACCGAGATGAACC 4830 29 100.0 32 ............................. GAGAGCGCGGTAACCGGCATGGAATTGTCCCG 4769 29 100.0 32 ............................. AGTGGACGTGACCAAGACCATGAGATTGCTTC 4708 29 100.0 32 ............................. ACACCACCCCCGTGGGAGAGGGTACCCCCGGA 4647 29 100.0 32 ............................. GTCCATGTGGTCGAGGTGTTGGTCTCCTCGGA 4586 29 100.0 32 ............................. ATGTCGTTGACGATGGACTGTACCTGATCGTA 4525 29 100.0 32 ............................. AGGTCACTGTCGATGTCATCGTAATCGTCGAT 4464 29 100.0 32 ............................. TGAAAGATTCGGCCTGAGCTTCGGCCTTAGGG 4403 29 100.0 32 ............................. GGCCGGATTGACGCCAGCACGTTTGAAGTCGG 4342 29 100.0 32 ............................. TGCCCGACCATCTCAAGACCCTCGCCACCGGA 4281 29 96.6 33 ............................A CGAACATCACCACCTATTACGACTATCCGTGGG 4219 29 96.6 32 ............................T GAATCGGACCGTTCGCACCACTGGCCGCCATG 4158 29 100.0 32 ............................. TGCGGCACGTATCCCACATATCAAGCCGCCTT 4097 29 100.0 32 ............................. CAACCACCGCCGAAAACGACAAGGCCAACGAG 4036 29 100.0 32 ............................. GCGCGTGCGGTCACGTCCACGATGGTGCCCGG 3975 29 100.0 32 ............................. TGCTCACCGACCTGAAAGAGGAACGAGCCAAA 3914 29 100.0 32 ............................. GGCGGCGCGTTCAGCGGCACGTTCACCTACCT 3853 29 100.0 32 ............................. TGGTCGGTGTCGAACGCCCCTTTGCCGTGGAG 3792 29 96.6 34 ............................A CGCGAAAACGCCCCTCCCCCGGCTTCGGCCGAGA 3729 29 100.0 32 ............................. CTGACCTACAGCAACATCGAGCAGTCGTGGAT 3668 29 100.0 32 ............................. CGCTAGATCGCGCCACCCCGGCCGACCCTTTA 3607 29 100.0 32 ............................. GGCAACGCCACGGGCGGCCGGCCGGGAGACCA 3546 29 100.0 32 ............................. TGAGTGGTAATCGTGCCGTCGCCATTGCAGAT 3485 29 100.0 32 ............................. ATCAATTCCACAAGTAAGCAGGTGCTTACAGA 3424 29 100.0 32 ............................. GCACTCGGCATCCACTCACCATCACGAGTATT 3363 29 100.0 32 ............................. TCGTCCATCGCCACGACCTTGCCGTTCCTCGA 3302 29 100.0 32 ............................. CAGCAGCTCGTTCTCCTCGCCGCCGCCATTGA 3241 29 100.0 32 ............................. GCGATCAACGACACGTCCAACGGCAAGGCCAA 3180 29 100.0 32 ............................. ATGGACACGTCCTTGGGACGGCGGTTCCGATG 3119 29 100.0 32 ............................. CTTCTGATCAAGCATGGCTGGCTGAGTCCATG 3058 29 100.0 32 ............................. CGGCTACAGGCGACCTCGGACGGTGTTCCGTC 2997 29 100.0 32 ............................. GCCAACTGCATGCCGCCGACACCATACGGCAA 2936 29 100.0 32 ............................. GCCAACCGTTGGTTCGTCAACCGCATTTTGAA 2875 29 100.0 32 ............................. CATGCGCCGACCGAATTGAAAATGCCGGTAAT 2814 29 100.0 32 ............................. CGTCAACGCCGCCAGGCGGCAAGACTGCTCCT 2753 29 100.0 32 ............................. CGGTGCCGATGGTCGCCTTGTTCGCACTGCTC 2692 29 100.0 32 ............................. GACCTGTCACGGGCATCCTCCGCGACACCAGA 2631 29 100.0 32 ............................. CAATATTCCCCGATCGCGTACAGCGCGGCGTC 2570 29 100.0 32 ............................. GGGATGCTCGTCGCAATTGTAGTGGAAGTCCT 2509 29 100.0 32 ............................. GGAGAATGCCTGACATGGGCTTCCTCCCACAA 2448 29 100.0 32 ............................. CAATTGCGTTGCACCATGATCGACGTGATGTG 2387 29 100.0 32 ............................. GCTCGCGCGGCAGTCGTCACGGTGACCGGCGG 2326 29 100.0 32 ............................. CGCAACGCAGGATGCCGTCATTGTCGATGGTC 2265 29 100.0 32 ............................. GGCTACAGGTTGGGTAAACTAAGATTTGACAG 2204 29 100.0 32 ............................. CGTTTTCATACCGCGACACGTTGACGGTGCTC 2143 29 100.0 32 ............................. TGGGTGGAAGCCAAAACCCTACGATCGGCAAA 2082 29 100.0 32 ............................. GTCATGCTCGCGCGTTCCGACGCTTGCCTAGC 2021 29 100.0 33 ............................. TCGAACATGAGAACATCCTCCAACTGCAAAGAG 1959 29 100.0 32 ............................. GCCCCTATCCTCTCGGATAGGAACGACATGTA 1898 29 100.0 32 ............................. CTCGTGTCGAATGTCTCGGCGTTCGGGGCCGC 1837 29 100.0 32 ............................. CTGCCCCTCGCCGAGGATGTCGACCTTGCCGG 1776 29 100.0 32 ............................. GCAGATACATTTCATGCACCTTCCAGTACGTG 1715 29 100.0 32 ............................. GTTCTTCAAGGACATCCAGGAATTCTTCCCCG 1654 29 100.0 32 ............................. AAGATGAAAGACGCGGATCCCAGCGGTTACGA 1593 29 100.0 32 ............................. GCGTCGGTCAGGCCGCCGGTCACGGCGGCCTC 1532 29 100.0 32 ............................. AAGGCCAACAACTCGCGCACCGCCCCCGGCAT 1471 29 100.0 32 ............................. ACGCTCACCTGGAACGACATGGCCGGCTATCC 1410 29 100.0 32 ............................. TGGGGCATTGGAGGCTTCTTCGAACTGCGCGA 1349 29 96.6 32 ............................G ATGGGCAGAGAGCTCACCATCATCGAGATCAC 1288 29 100.0 32 ............................. GCCGACGTCGTTTGAAATTTCCGTACCAAGCG 1227 29 100.0 32 ............................. ATAATCAGGTGGTACGGTAAATTTTGCAGTAT 1166 29 100.0 32 ............................. GTGCTGAAATTGAAAAAGAATTTGCAAGTTAT 1105 29 100.0 32 ............................. CAAGGTCTGGTAAAGGTGCGGGTAAATGGTTA 1044 29 100.0 32 ............................. AAGGATGAGCTAATCCTAATTACCACGCCTGA 983 29 100.0 32 ............................. TAGCGGCGATAGCCTTGGTTAGTTCGTTGATA 922 29 100.0 32 ............................. TCAACCCGTCGGCCGGATTCCTCTACATCCGT 861 29 100.0 32 ............................. GCCTGGAAGGACTGGGGGCGCACGTATCTCGA 800 29 100.0 32 ............................. CCGTTGCCGTTCACCAACGAGCAGGTTTCCGC 739 29 96.6 32 ............................G TGCCGCTGATGCATGCGAGCGCCGTCGCTGTG 678 29 100.0 32 ............................. GATGCTGCCGCGTCGCCGATCTTGCTGGCGGC 617 29 100.0 32 ............................. ATGGCTACATTCCGGAAATCGACGTCCAGTTG 556 29 100.0 32 ............................. CGTTTTTCGACCTTCCACGCTCCGAAGGCGTT 495 29 100.0 32 ............................. CAGACAACAAACATTAACCCAGTTAACCAATA 434 29 100.0 32 ............................. GGGATTATGGTGCGCCGACGGCACCATACGAT 373 29 100.0 32 ............................. CGATCGGCGTCGAGTGGAACGACACCGCATCC 312 29 100.0 32 ............................. GGTACCGGCAATCGGACGGGCAGTCCGTATTT 251 29 100.0 32 ............................. GTTCGGGAACGTCTGGAACAATCCGGTGATAT 190 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 82 29 99.8 32 ATGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : ATGTGGGCTTATGGGATGACCGGGCGGGAGAAGTACCCGCTGGAAAATCCTATGTGGATGATGAATGGGATGGCAAAGAATGGTAGTGGTTGTGCTGACGGCGTGCCCGGTGGGCTTGCGAGGTGATCTCACCCGATGGCTGTTGGAAATATCGCCGGGCGTGTTCGTGGGGCGCATCGATGCACGTATCCGTGAGAAACTTTGGGAACGCATTGTCAAGCTCTCGAAAAGTGGCCGCGCCATTATGGTCTATTCCGCACGTAGTGAACAGCATTTAGCGTTTAAAGTGCACAGAGCGGATTGGTTGCCAACGGATTGTGATGGGTTGGAGCTTGTGAAGCGTCCTAATGAGGTGAAAGAGCAATCATTCGCTGGCGCTCCTCATCATGGATGGAGTAATGCTAGCAAATATCGTCAGGCAAAGAAATTTGCAAGGCGAAACTGAATCAAAAAGTGTGCAGAAGCAATGAACAGCCTTAGTATTATGCTATTTTCTTAGT # Right flank : CTTGTATGTGCCATCCGCGAGCTTAATATACTTATGTGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGGCGGCTGGAAACGGCATCGGCGGAAGAGAAGCGCCGGTGCCGTACGGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //