Array 1 1955-2898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBFG010000012.1 Escherichia coli strain C103 Sample_C103_R2_contig_12_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1955 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 2016 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 2077 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 2138 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 2199 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 2260 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 2321 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 2382 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 2443 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 2504 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 2565 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2626 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2687 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2748 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2809 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2870 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28598-30456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBFG010000012.1 Escherichia coli strain C103 Sample_C103_R2_contig_12_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28598 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 28659 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 28720 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 28781 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 28842 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 28903 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 28964 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 29025 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 29086 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 29147 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 29208 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 29269 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 29330 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 29391 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 29452 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 29513 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 29574 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 29635 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 29696 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 29757 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 29818 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 29879 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 29940 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 30001 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 30062 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 30123 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 30184 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 30245 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 30306 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 30367 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 30428 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //