Array 1 29961-28938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069440.1 Phocaeicola coprophilus strain FDAARGOS_1220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 29960 33 97.0 32 ................................T CAACTGGATTGACAAAAGGAACCGGAAGTTTC 29895 33 97.0 33 ................................T GCAAAAAGTAGAGGCATTGGCTGATTTCTTTGA 29829 33 100.0 33 ................................. TGTCATGGGGCGATATGGATGAAAATGGGAAAC 29763 33 100.0 33 ................................. GGAAGCCGGAGTCAATCCGGAAGTGATCATCAA 29697 33 100.0 33 ................................. AGACTTATCCCAAATTGAGGATCGGTAAATACA 29631 33 100.0 33 ................................. GTGTAGCCAGCGTGACAAACAACAACACGCAGA 29565 33 100.0 33 ................................. TAATTCTATGGCATAACTGTACCCGCATGGGTG 29499 33 97.0 32 ................................G TTGAAAAGTACAAGTACCAGTATATTGACAAG 29434 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 29368 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 29302 33 100.0 33 ................................. CTAAAACCTACTATATCGGCGAAGCTAAAAAGC 29236 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 29169 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 29102 33 97.0 32 ................................T TTACTCTTTTGATTATTTTTTGTTACATTTGC 29037 33 97.0 34 ................................T TTTGTATATAGGTTTTTCACGAAGGATATCCAGC 28970 33 90.9 0 .....................C..G..A..... | ========== ====== ====== ====== ================================= ================================== ================== 16 33 98.1 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : AAAATGAGACCATGATACAGAAAGATTACATTTCAAAGAACCACTCGAAGTTTCTCATCAAATATCACGTGATATTTGTATGCAAATACAGGAAGAAGCTACTCATTGGAGCAGTGGAATATGACATGAAGCAAATCATGCAGAACATATCAGACCTGTCAGACTTTAACATTGAGGTCATGGAAACCGACAAAGACCATATTCACATGATGATATGCAGCGAACCAAAACTCTCTCCGCTGCAAATCGTAAGGAGGCTAAAACAAATGTCAACAACTGCCATTTGGAAAAGACATGAAAATTACCTTAGACATGTATTTTACTGGGAAAACACATTTTGGACGGATGGATATTTTGTGTTATCAGTCGGAAATGTCAGTCAGGAAACCATCAAAAAATACATCGAAAAACAAGGGTAGCTGCGCTACCCCACATTTTTCATCCCCTAAACTGAAGATTTAGGGGTTTTCAAATGCGAGTTCCTATAAAACAGATGTTTA # Right flank : ATTTAATGGTACTCATATTTACTGATAGTCTGCTTCCACCGGTATTATCTCTTGAATCAGGCACGACAGATCCATCATTCCGGCTTCCTCCGGCACTTCCTCCGTTATCAGATCCTCGCTGCTCTTGAACAGGTTCAACGCTTCCTGCATCTGGTCTGTCTGCATTATCCACCTTGTCAGCTTTTTCTTCTGCTGTGGATCGTTCAGCTTGTTCTGGTCCGGATACGGTAGTATTACCGGTGCTTCCCATGTCATTGTCAGATCCGACTTTTTTGTCTGATCGTACGGATTTTCCCCGTTCTCCAGACTTAGGTCTATTGCTGACATTATTGTTTGCTCCACTTCCTTCTGTGTCAGTGGTCCGGGCTCCTCCTTTTGCACCGTTAAAGAGATTCCCCATTTGCTGTAATGAACGTATATCATCTTGAACTCGGCTATATAATTCTTCAAAGCTGTTTACCTGTTTCGCTCTGGCTTTGCTCTTAACCAGTGGAGCTATG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32320-31756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069440.1 Phocaeicola coprophilus strain FDAARGOS_1220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 32319 33 97.0 33 ................................A ATACACGTGCGCCGAAAAAGACACGTAAGACAA 32253 33 100.0 32 ................................. TGTTTCATAAGTTAGCAAGTGTCTAGCTGTAT 32188 33 100.0 33 ................................. CCGCCCAGCGACGGGTTGGCCCATCGCAGCAGG 32122 33 100.0 34 ................................. GATATTGGTGCTGTAAACTTTACGAGAGATAACC 32055 33 100.0 33 ................................. ACCGCTGAGTTTTTCTTGTAAGGAACATTGCCT 31989 33 97.0 33 ................................A ACATCAAAAAGCGCATAGCAAAGAAAGCTCTGG 31923 33 97.0 34 ................................C GGATGTTGTCAATATTGGAATAGCTGCATCCCAG 31856 33 97.0 35 ................................G ATTAACAGGGCAGAAGTCCTGGGCGGCAACGTCTG 31788 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Left flank : TGACGGTTTCCTTGTCAATCGGTAACTTGCGGCTTACACCGCGGTTGGATTCTCCGGCCTGCTTGAGCTGGAGTACTTGTTTTATCAGACTCATATCCTTTGTTGTTCCTGCCATGACTGTGCTGTTTCTTGTTAGCTTACCAGCACAAAGGAAACTGAAACCGGGGAAAGAATGAACGGATATGCTCCGGAAACGAAGATATACGCTCACAATTCCATGCACGGCTGAACGGATATACTCCGGAAAATCTGAAAGCATACGTCTAAAGTGAACGGGTATGCTCCGGAAAAAGGGTGCTACAACCTGCAATTCTCGGAGGTGAACGGATATGCTCCGGAAAAATTGAGATTTTAATGTCTGGTTATCCATTTTTTCATCCTTTTAGGGGATGAACGGATAAAAATTACGCTTTTAAGGTATGGTTTTATACCCTAATAAGCTGCCGGAAAGTGAACGGGTATGCTCCGGAATATGTATAGAAGGAAAACCAATTTGTATT # Right flank : TAACTTTGTATTGCAAGGTGAACTACCGCTAAACTAAAGATTTAGCGGCTTCGGAGATACCAATACCTCCTCTCTTTTCCTGCTTCTTCCTGCCATTGCTTTTTAGGACACGAGGTCGGTCATCCACAAGAGGACAGTCCACAGGCTTGACTTTCCCACGCTCCGTGGGTAGGGCTTTCAAGCCAAATTCCTTGATGTTGCAAGCGGCATTGAAGTCCCGGTCGTGATGTGTACCACATTCCGGGCATGTCCAACTGCGCTCGCTAAGATTCAATCCTTTGTACACATGGCCGCATTTGCCGCAGGTCTTCGAACTTGGGGCAAAGCGGTCTATCTTAATGAGGTTCACACCATACCAACTGCACTTGTATTCAAGCAAAGTTAGGAACATACCGAAAGAAGCATCTCCTACGGCTTGTGCCAAATGGTGGTTACGCTGCATCCCTTTCACGTTCAAATCTTCCATGCAGATAGTGCGCACTTGGCTGTCGTGCGTGAGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 35373-35142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069440.1 Phocaeicola coprophilus strain FDAARGOS_1220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 35372 33 100.0 33 ................................. TGTTTGTGTGATTTTTTACAAAACTAGCTTATT 35306 33 97.0 33 ................................T GAAAAGAATTGATGAACTCAAGGTGGTTTATCA 35240 33 100.0 33 ................................. GCTAGTTATTAACAGAACTGACGAAACAGAGGA 35174 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 99.2 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : ATATTGATGATTATCCTGTATTTTTAATTAAATAGTGTATTATGTACATTCTAGTAACATATGATGTGGACACGACAAGTAAAGAAGGCGCTCGTCGTTTACGATGTGTGGCTAAAGCATGCCTTAACTATGGGCAAAGAGTACAAAATTCTGTATTTGAGTGTGAGGTTACTGAAGCACAGCTCTGTACATTAAAAAATATAATTGGCAATGTTATTGATACAAAACAAGATAGTGTCAGGTTTTATTATCTTAATCGAAACATAGCCAGAAGAGTAGAAGTTTTAGGGAAAGAAACATCATACGATGTAAATGATGTAATGATTATCTAAAGTGCGAAACTTATGTAATACACGTTTCCTTGAGTTTTCGCACATATTGAAATATAAGGAATTACATTTTTACATTTAGTATAATATAATCAGAACTGTATCTTAATTATTAATTTCGCAAAAGCTACAGTTTAAATATCTAGAAAACTGATACATATCTAAGAATCA # Right flank : AATCTAGACATAGAAGGATGCATATTCCGGCGGATACCCGTTCAGCATTTCCGGTGATATCCGTTCAGTCCCCAGTTAGTATTCAGTGTTGTTGGCAAAGTTAATACTTCTTTCTTAGGCTCTCTCCTTTAAGGTCAAATTTTATTGCCTTATGCACGATTCTGTCCAGACAGGCTTCCGCAATGAGCTCGCTTTGGAACACATCATACCAGTCTGCAACGGGAAGCTGGCTGGCCAGGATGAGTGCCTTCCGGTTGTACCGGTCATCTATGATCTGTTCAAAGTCATGCTGTATCTGGCCGTCCAGCTTGACCATCCCAAAGTCATCGATAATCAGCAGGTCATGTGCGTTCAGCTTCCGGAAGAAGTTTGTTTCCCGTCCTTCCAGATGTGCAAGCTTCAGGTTCTCGATGAGCATGTTCATCGTGAAGTACAGTACCTTCCGGCCGTTCCTGCATGCCCTGTCACCCAGGGCACAGGCAAAGTAGGACTTCCCGGTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 550649-552381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069440.1 Phocaeicola coprophilus strain FDAARGOS_1220 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 550649 47 100.0 30 ............................................... CTATGCGGTGGATATTGACGGTGAGGTGTC 550726 47 100.0 29 ............................................... GAGTTGTCAAGCGTGCCGTATCTGGATCT 550802 47 100.0 29 ............................................... TAGAAGGATCCGACACAGATACTATAATC 550878 47 100.0 29 ............................................... AAGAAATTGCTAATATTAGCCCAAGCCCG 550954 47 100.0 30 ............................................... ATATTTGCAATACCCAGCAAAATCTCCAAG 551031 47 100.0 30 ............................................... GACTTGAACAAGAAACACAGAAAAAATCAA 551108 47 100.0 30 ............................................... CGCAAAGGATATTAGCTCTTCGACATCTTT 551185 47 100.0 30 ............................................... AAGCGGAGCAAACATTAATATGTTTGCGAA 551262 47 100.0 30 ............................................... ATAGTAAAAAAAAGTTAGTATCTTTGTAGT 551339 47 100.0 30 ............................................... TTCCCTAGTATATTATACAAGATCACTACA 551416 47 100.0 30 ............................................... AACATTCCTTTACTCTATTTTCTACGTTTT 551493 47 100.0 30 ............................................... AAGACAGAAAGGTATGAGCAGCTTTAAGGA 551570 47 100.0 29 ............................................... TTGAATAGCGCCTGTTTCTTTTCAAAATT 551646 47 100.0 29 ............................................... AAATGCAAATAATAACCAAAAACTCTCAG 551722 47 100.0 30 ............................................... TTCTTTACCTATAATAAAATCACATATAAA 551799 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 551875 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 551951 47 100.0 30 ............................................... TTAACTGGGGAGAGGTTGGTAATGTTTGTT 552028 47 100.0 30 ............................................... GCATGCATGAATGTTCCGTAAGCAGCCCTT 552105 47 100.0 30 ............................................... TACCGATTGCGTGAGATCCTTGCAGACAAA 552182 47 100.0 30 ............................................... AGTTAAATGGAAATTATCGTTTGATGGATA 552259 47 100.0 29 ............................................... GGATGCTTCAATCACCTCATGAGATTGAG 552335 47 85.1 0 .............................T..G.GT.....G..CG. | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.4 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : GCCTCTTTATATAAATGCTTTAGTGGTGAATTGCGTAAAATTGCTTATCCAGAAATGTGATGGATAGATACAGTGAATATCGTATTATGTGGATACTTGTATTTTTTGATTTGCCTACAGAAACTCAAAAAGACAAGAAAGCTTATACCTTGTTTCGTAAGAACCTGCAGAAAGACGGCTTTACAATGTTTCAGTTTTCTATTTATGTTCGCCATTGTGCCAGTTATGAAAATGCAGAAGTTCATATCAAACGTGTCAAGTCTTTCCTACCGGAATTTGGTCAAATAGGGATTTTATGCATAACAGATAAACAGTTTAGCCAGATAGAATTATTTTATGGGAAGAAGCCTCAAATTAAGAATGTTGCTGGACAACAATTGGAGTTGTTTTAGAAATAAAAAAATCCCGTATTTAAACGGGATTTTTTTATTAGAAATATTTCTTTTTTATTTCTAAAACGCTTTGCAACTTATTGGTTCTTATCTAGTTATTAGATATCA # Right flank : CACAATACCTTCGTCCGTTGAACTGGTCAATGCAAAAAAAACGACCGCACGATTGGCCCTCAACGACCGCACGATTGAGCTCCAACGACCGCATAATTTGCCTTGATCGACCGCACGATTCCGGAGGCCTGTCAGAATGAGTTTTCAGAGGCTGGAAATACCTTTGGGAGAGGTGAAATAAAGCCCGCGGGCTTTTTAAAAAACGTTTCGGGCTTTGAAGGAAAAGACTTCGGGCTTTTGAGTAAAACGTTTCGGCGTTTTTCTGTGCTTATGCTGAAGCTTTTCTGTTAAGAATCTTCTTGAGAATATTTTTTCTTGCAATGGCAAGTCCGGAGGACAACGGCTCATTGTCCAACAGGCTCAGAATGTTTTCAAGTTCTGACAATAAGTCAGTATGAAACTTGCACTGTTCGTATGAAAGCTTTATGCATAAGGCTCTGACTCCACATGAGTTTTCACAGGACGTAATTCCGGACAGGCAGTAATCGATGAAGTCGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //