Array 1 959593-959269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014119.1 Staphylococcus epidermidis strain FDAARGOS_153 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 959592 36 100.0 36 .................................... AAGCAACTAGCTCATCGTTTTCCGTAGCAAATTCAA 959520 36 100.0 37 .................................... AGATTAAAACTATCCAAACCCACACCGGCACATCTAA 959447 36 91.7 36 .....A............AT................ TCATTTCTATCCATTCAATATAAGTTTCACGTTGAA 959375 35 88.9 36 .....A....-.......AT................ TCAATAAGCCACGAATTAATGTATACGATATCTCTA 959304 36 83.3 0 .....A.......T....AA.............T.T | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 92.8 36 ATTCGCTAACCACCCCGCCGAAAAGGGGACGAGAAC # Left flank : GTACGTCTTAATATTCAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGATGTTAAACGTTTTTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGACAAAGAAACATTAGATTTTTTAATGAAAAATGTTAATATTGTCGACTACAAATTGAAAAGTACACGTTTTAACTTAGAAAAAGTTAAAATTCCTTCGTTTACAGGAGAAATGGTGTTTAAAATTAAAGGCCCCTTACCTTTTTTACAGTTAACTCATTTTTTATTAAAGTTTGGCGAATTTTCAGGTTCAGGTATGAAAACAAGCTTAGGTATGGGAAAATATAGTATAATTTAATTAAGACATAGTTAAAATTTAGTTGTCAAAAAATGTGACATTTAGCGTCTATAGTACAGGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTCGAACTATTGATATGATTGGTTTTAAAGAACTGTC # Right flank : TTTTAGCGTAGTAGCAAATATTAAAAAATATATTTGATTTGATAAACTATCATACGTATCTCAATATTATCAGGTATTCCTAGTTCTCAAGACATGAGTTTAGGAAGATGAGTATTTTTAAGATTTTGTAATTTTTTATTAAATATATTTCTGGAAAGATTTTTTTATAACAGTTGTACCATTTTTATAATTGATATTGTTTAGAATATAAAAGTTACTTTACTTGAAGTATCTGGAAGATGTGTAGGTAAATTGTTTAAATAATAACTTTTAGATATTTCATTGGGTAATATCTAAATATTATAATAAGTATTAAATTACTTTCCGAAACATGAGGTAATATATGAAGATTATAAAAATTTCACACGGGAGCTATGTTGGCTGTTAGTCTATTTTAAGTGAAAGATGTCCTCAATTTTAGATAAGGTGTAAAGAAACGGGGATTAAATGTATTATCAAAAATTGGCTAATTGATGATATTTAAAAATGAGGGGATAGAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCTAACCACCCCGCCGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 969136-968314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014119.1 Staphylococcus epidermidis strain FDAARGOS_153 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 969135 36 100.0 36 .................................... AAGGTGGTAACAAAAATGATTACATTATATATACTT 969063 36 100.0 36 .................................... AAGAAACCTACACTCTCAATTACATACCAACCAACA 968991 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 968919 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 968847 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 968774 36 100.0 34 .................................... GGTGCCAACCTGTGCCCCCTAAATCATTTCTGTA 968704 36 100.0 35 .................................... CATTTCAATCATATCCTTTTTAATAATTTTTTTAT 968633 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 968560 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 968490 36 100.0 35 .................................... TTAACTTCATTTTCACGACCTACTAATGGACCTTG 968419 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 968348 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 98.6 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : GTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,15] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //