Array 1 423487-424979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKO010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5733 .24042_7_358.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423487 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423548 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423609 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423670 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423731 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423792 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423853 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423914 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423975 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424036 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424097 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424158 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424219 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424280 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424341 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424402 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424464 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424525 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424586 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424647 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424708 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424769 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424830 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424891 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424952 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441111-443075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKO010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5733 .24042_7_358.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 441111 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 441172 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441233 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 441294 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 441355 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 441416 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 441477 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 441539 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 441600 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 441661 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 441722 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 441783 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 441844 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 441905 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 441966 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 442027 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 442088 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 442149 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 442210 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 442271 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 442332 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 442394 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 442455 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [442497] 442497 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 442558 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 442619 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442680 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442741 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442802 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442863 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442924 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442985 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 443046 29 96.6 0 A............................ | A [443072] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //