Array 1 1296-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPW010000235.1 Lactobacillus crispatus strain LB57 Contig_235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1295 29 100.0 32 ............................. ATTATCTGTATTACATGAAACAGCTTCAAACG 1234 29 100.0 32 ............................. AATCAGTCTGCTAATGATGCTGAAATTGCTAA 1173 29 100.0 32 ............................. CTCTACAAATACTTGGCGAAGATATATGAAGA 1112 29 100.0 32 ............................. CTAGCGACCCTTTAGGGGCGCTTAGCCGATAG 1051 29 100.0 32 ............................. AAAGTTGGCTTTGCGTTTGCGTAACCAATCAA 990 29 100.0 32 ............................. GAAGCCAGTAGTTCAACTGTTGAAGCACGATA 929 29 96.6 32 ............................C TACAAGAGACACCACGGTGACAATATGGATTT 868 29 100.0 32 ............................. TTACCTAGCATTTTTCTAAAGCATTGCAAAGT 807 29 100.0 32 ............................. CATGAAAAGTCAGAAGGCTTTGACAACCAGCT 746 29 100.0 32 ............................. TACCTGCTGATTACCTAAATTTTCAAGCCAAG 685 29 100.0 32 ............................. TCAAAGTGTGCTTCACCAGATTGCTGATAAGT 624 29 100.0 32 ............................. GGTTGGGCGTTTTGTGCCTCATCGCTTAAAGT 563 29 100.0 32 ............................. GATTAAAGGTATTGAAACAGCTGATTTTTCTA 502 29 96.6 32 ............................C CTGCTGGTCTTTTTCTTTTCGGCGGTCAATCG 441 29 96.6 32 ............................C TAATGCAATGATCATGGCAGATATAGAAGAAA 380 29 100.0 32 ............................. CCAAACGCTTAGGATTTGCTAGCGATAAAACT 319 29 100.0 32 ............................. TAGTAAATAGCGCGGATCCGTGATTGAAAATG 258 29 96.6 32 ............................C ACAAAACGATCCTTGAAGCATATTACATTCGG 197 29 100.0 32 ............................. TTTGCTCAAGATAGCGAAAATGAGGTTTTTAA 136 29 96.6 32 ............................C ATAAAATGGCAGGGTTAACCTGGATAGATAAA 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATATTAGCGGCATCGCTTAAA # Right flank : TACCATGCTTCAAGCGCTATTCATACTATTACCGTATTCTCCACGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2804-2520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPW010000089.1 Lactobacillus crispatus strain LB57 Contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2803 30 100.0 31 .............................. TCATCTTGAAGGGCACGGGAGACAAGGCAGA 2742 30 90.0 32 ...........ACA................ CTGTTAACGGTGATGACTGGTATCCAGTTAGC 2680 30 100.0 31 .............................. CTTTGAGCTGTGTCAACGCCACAGCCGTTTA 2619 30 86.7 39 ...........ACA..............A. GTCGTTACATCATTACATCAGCCAAAAGATGAGGCTTAA 2550 30 70.0 0 ...........ACA.........A.ATAGC | C [2523] ========== ====== ====== ====== ============================== ======================================= ================== 5 30 89.3 34 GTATTCTCCACGAGTGTGGAGGTGATCCTA # Left flank : GTTTATACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGTATTCAAAACCGGATGCATAGAGGAATTACCATTTTGCATGATGCTGAAGGTGCATACAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAATTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCTATAAAATTAACTCATACTGGCAAAAATACTAAATGGTCATTAAAGTTCT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 50756-50270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPW010000086.1 Lactobacillus crispatus strain LB57 Contig_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50755 36 100.0 30 .................................... AGTAGTCTCCAATTCAAAAGGTGCTTACGT 50689 36 100.0 30 .................................... AAGCACTTGAATCTTGTCCCTGCTAGGAAC 50623 36 100.0 30 .................................... TCGAATTTAGAAAAATCAACATTAACGCGG 50557 36 100.0 30 .................................... CCGTGAAAACGGCGTTTACATGCGTAAGAC 50491 36 97.2 17 ..........G......................... TATTAGCTTTTGCGGCG Deletion [50439] 50438 35 80.6 30 ..ACC.A.C.G..-...................... TAAAGAAATAAATAATAGAGGTGTGAGGTA TGC [50430] 50370 36 100.0 30 .................................... CCACTATCGCGCCTGGAATACCTGTTTTCT 50304 35 83.3 0 ......................-..G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.1 28 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : TTTCAATCGAATTCATAAAGGCTTTGGTCAGGTTCAGGACACCTTAGAATCCTACTTTGATTAAATAAATAATTAAAAAATCAATTTACGAGAAAGATCTATTTACACAAAAGATTTGACAGTTTCATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGAAATATGGGGTAGCAGTCAAGGATGCTCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATC # Right flank : AGTAATATGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTGGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATACCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCTAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //