Array 1 1165043-1163633 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRW01000001.1 Oligella urethralis strain NCTC11010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1165042 28 100.0 32 ............................ TGTCATCGTGCACTAAATAATAAAGGCGATCC 1164982 28 100.0 32 ............................ AAAGAACTTGAGGATACCGAGCGAATCCGCAA 1164922 28 100.0 32 ............................ TTGCTCATCAACGTCTAAGCTTGGCGCTTCGC 1164862 28 100.0 32 ............................ TCAACAAGACAGCTACCGGCATCAACATCATC 1164802 28 100.0 32 ............................ TAAAGGCGCTGTGCCTACGATGTTACCTATGA 1164742 28 100.0 32 ............................ CCAACATTAAGTATGAAAACAATCAATACCAT 1164682 28 100.0 32 ............................ GCTACGTTTCTACGATGTTTTTCTGATCTCAT 1164622 28 100.0 32 ............................ TCGATTAATACTTGTGTCGTTTTGATTTGTCA 1164562 28 100.0 32 ............................ TGATATCTCAAGTGCTTTTTCGAACCCTCCTT 1164502 28 100.0 32 ............................ CATGCCCCATCAAAACCTTGATGAGCCTTGAT 1164442 28 100.0 32 ............................ CTTACAAGCTGAAATTGAGCGCTTAAAAGCGG 1164382 28 100.0 32 ............................ AAAGTAGCCGTTGCTGTCGCCGCCTTAGTCAC 1164322 28 100.0 33 ............................ TATGAGCGGAAAAATTCATTATGAGGTGCCCAC 1164261 28 100.0 32 ............................ TAGTACTCACGTTAGTTAGCTTAGTAATTGAG 1164201 28 100.0 32 ............................ AGTTATAACTGGGCTTTAACATATAGTCTTAA 1164141 28 100.0 32 ............................ GCAACAAGCAAAGGTGCGGGTAAAGCGTAAAT 1164081 28 100.0 32 ............................ TTGGACACTCATATTCTCCTAAAAAAATCCCT 1164021 28 100.0 32 ............................ TTTCTCCTAAATAAGTAAAAATAGGCTATCTT 1163961 28 100.0 32 ............................ AAGTTCAGCGCCCCACTGAATGGCAACTAAGA 1163901 28 100.0 32 ............................ GTTTAGTTTCCCGTCTCTCAATAACGACATCA 1163841 28 100.0 31 ............................ ATGCTCGGTAGTCATTCCGTCAAGATGTTGA 1163782 28 100.0 32 ............................ TCTCATCAGCCCACTTTAATTTGCCGAACAGC 1163722 28 100.0 32 ............................ ATACCTGATCAGGTGGTTTGGCCTTGCTAAGG 1163662 28 100.0 0 ............................ | TT [1163638] ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCTCTGCCGTATAGGCAGCTTATAAA # Left flank : CCTGGGTAAAACACACCTTGCCAGTGCCCTTGGGTATGGGCTACTAGAGCAGGGTTATAAGGTTAAGTTCATACAGGCGACCACACTTGTACAGCAGTTGCAACTAGCTAAGCGACACCTCAAGCTACAGGACGAATTGAAAAAGCTGGATAAATATCAATTACTTATCATTGATGATGTCGGTTATGTTAGAAAATCCGAACAAGAAACTAGCGTCTTATTTGAGCTGATAGCGCACCGTTATGAACGCTTTAGTTTAGCTATTACATCCAATAAGTCGTTTGAAGAGTGGGATGAGCTATTTGACGATACCACGATGACGGTGGCTGCCATTGATCGACTCGTACATCATGCCACAATGATTCATTTTACAGGAGAGAGTTATCGCAAGAAAGAAGCACTAAAAACCCAAGACAAGGGGCAGTAAAAACCGGCCAAGTTAATTGACGCTAAACCGGACAAAGTAGTTGACGTTCTATACCATTTTTTTCTTTTTTTGA # Right flank : GCGCACTTGCATTTTCATTGTTATCACAGCTGTCTCAACAAATATCAAGAATTAAATGCGAAGATTAAACGCATCAATAATATATATACTGAAGAGCGCCTGAAGGTTAGGAGCATCAAAGAAGTCAAGAAAAAAGTGATAGCACCATCTCAGCGTAAAGAGATGGCGTAAACATCACGACATCAGGATTAGCTAGTCTTGCCATGAATTCAGCTTAAATCAAAGCGGCTTTACTACCCAGCCAAGAATTAAAATAACAATGAGCTAATTGCGGATTGCTTCTTATGGCTCACTACCAAACAAAAATTGTGAGGCTTTGGTCTCTACTTTCTTCGTCTACGTAACCTCAAGGGCTTTAAGTGGAATAAAATGTCATCAACAATTTAATTTAATCCCTCCCCGGAACTGCAGTTTTACACTGCGCTTGACTATGTTAAAAAAGCAATAGCTTTATTTATTTATAAACAATTATTCCAAGGAGTTCTACCATGAGATACATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTATAGGCAGCTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1170555-1167479 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRW01000001.1 Oligella urethralis strain NCTC11010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1170554 28 100.0 32 ............................ GAGATCCGCAACTACTTAAAGCAATTCGATGC 1170494 28 100.0 32 ............................ ATTTCGTTGTAAGAGCAGCAAAGCTCTATAAC 1170434 28 100.0 32 ............................ GAATACCTCAAGCCATTCCATAACGGCTTCAG 1170374 28 100.0 32 ............................ TTAACCCCCCGCGGAAAAAAGCATGTCAGCAC 1170314 28 100.0 32 ............................ TTTTGCGCAATGCAATCGCCATCCTTAACCCC 1170254 28 100.0 32 ............................ TATGACTACATGCGTAATACACGACAGCTTAA 1170194 28 100.0 32 ............................ CTGTTTATTTAATTGTTAAGTATATTATAAGT 1170134 28 100.0 32 ............................ ATGGAAGATAAGAAGGAACGTTTATCTTCCAT 1170074 28 100.0 20 ............................ TAAACCATAACCCAAAACAA Deletion [1170027] 1170026 28 100.0 32 ............................ TTTAAAACAAATCCCATTTGACTTTTTACAAC 1169966 28 100.0 32 ............................ TTCTTACAGGATCAAATTCAGTCGTTAACAAC 1169906 28 100.0 32 ............................ TCGAGTCTCAGCTGATGTGTTCACATTATTAT 1169846 28 100.0 32 ............................ TATTTGACTTTTTACAGCTTGAGAAATAAAGT 1169786 28 100.0 32 ............................ AACTCCGAATACGAGTCTGCTTAGTTTTGATG 1169726 28 100.0 32 ............................ ATAACCTAAAACTAAAGTTAAACTAAGACTAA 1169666 28 100.0 32 ............................ TCGCTGAGCAATCAACGAGGCTATAAATGAAA 1169606 28 100.0 32 ............................ TTTGCTTGAACAAATAGAACGCAACGACTCGC 1169546 28 100.0 32 ............................ ATCCCGACGGCAAAGTCGAATCAAGTTATTTA 1169486 28 100.0 32 ............................ CGTGCTTGCAAGCACGGGGAAAGCAGCTATAA 1169426 28 100.0 32 ............................ GAAAGATTGATAATGTTTTTTTCGATCGCTTG 1169366 28 100.0 32 ............................ ACTAATGTTTTGCACCGCATCTTCTTGATACG 1169306 28 100.0 32 ............................ CAGCGCTCGCGCATTTGCATTGTTATGACCAC 1169246 28 100.0 32 ............................ ATCCGGCATACTTAGTGAACCAAAGTCCGCAC 1169186 28 100.0 32 ............................ ATTTTGGCTATTCAAACTCAACGTTAATTTTT 1169126 28 100.0 32 ............................ TTAGCTCGCTCATTGTGCGCTCAACACGATGG 1169066 28 100.0 32 ............................ ATTAACGAGCGCACTTATGCGGTACAGGGCAA 1169006 28 100.0 32 ............................ AGCCAGCCCGGATTTTTGCGATAAAAAATGTA 1168946 28 100.0 32 ............................ ATAGTTAATTATTATTCAACTATTTCCAAGAA 1168886 28 100.0 32 ............................ CTATGCCTTGAATAAAAAAAAATTCTTTTTAT 1168826 28 100.0 32 ............................ CCGTGCAGTTAAGCACGGGGCTAATCTAAAAA 1168766 28 100.0 32 ............................ TAAATAAGTAGATAAATAGATAAATAAATAGA 1168706 28 100.0 32 ............................ CGATCGCTAAATACACCCTGATCATGTACTTA 1168646 28 100.0 32 ............................ TAGTTGCTTGGTCGCGGCTTCCGAATACTCTT 1168586 28 100.0 32 ............................ TAAGTAACCGTTAAAGTTAGGCAACAGCTCAG 1168526 28 100.0 32 ............................ ATCCTCAGATGCCTTCGTACCGGCAGCAATCA 1168466 28 100.0 32 ............................ AACGATACCCACCGCGTCACGTGCTGACTATG 1168406 28 100.0 32 ............................ GATGCAGTACAGAGCCGGCAAGTCGGCAGCCA 1168346 28 100.0 32 ............................ ATGCACTTTAAGCGCTGCGCATAACTGCGACG 1168286 28 100.0 32 ............................ GCTAAATCAGTAATTGCATCATGTATGCGCCT 1168226 28 100.0 32 ............................ ATTCCGCGTCATCTTTCAATGGACTATCTTCT 1168166 28 100.0 32 ............................ TGTAATGTTCCGAATCGCATCCGCTTGATAGC 1168106 28 100.0 32 ............................ TAACAAAGAAAATTGTTCGGCTAAGTAATAAA 1168046 28 100.0 32 ............................ ATCGGGTAATCCACTAGCTTCGTGTTTAATCA 1167986 28 100.0 32 ............................ ACGTGCTTTCAAATATTCGCGCGCTGCCTGAC 1167926 28 100.0 32 ............................ AGATTTCGAGGCGGCAAGGGTATGGTTGCCAC 1167866 28 100.0 32 ............................ AGATTCACTTTGGAAAAGACTATTTTCCATCA 1167806 28 100.0 32 ............................ TATGCCCCATCAAAACCTTGATGAGCCTTGAT 1167746 28 100.0 32 ............................ TAAAAAGTCACTGTATGAATTAGCTTTGGCTT 1167686 28 100.0 32 ............................ TTGATTAGTTTCGGATCGGGCGGATCCAGTCG 1167626 28 100.0 32 ............................ GCCTTTGCGTCAGGTCGTGCGTTGATGCAAGA 1167566 28 100.0 32 ............................ ACCGGCAAAACGGTTTATTCCATTGTTCGCCA 1167506 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 GTTCTCTGCCGTATAGGCAGCTTATAAA # Left flank : TCATTTCGAATATCCATGAGATCCCTAAACAGGTTCCAAGATACTTTACTTATAGTCGTGTGCAAAACAAAGGAACGAGCGATTTAAAAAGGATAAAAAAAGCAATGCAACGTAGAGGTAAAAGCGAGGCAGAGATTCAGAAGGTGTTAGAGCTAAGGATTCAAAAGCTGAAGCCTGTCACATTGCCTCATGCTCATATTAATAGCGCTTCTACTGGGCAAAGATTTTTGTTAATGATTAATCGCAAACCAGCTCCTATGAAAAGTGAAGGACTTTTTAGCAGTTATGGTCTGAGTCCTACCTCAACAGTACCTGACTTCTAGTTTAGTCTATGAGTCAATGATGCAAAAAACCCTTTTCTTAAGATAAACCAACTCTCTGCAAAGAGCGCGCTAGTACAAGGCTCACAAGGGATGATGTATTTTGAAATAGAAAAGGGTTTTATATGCATGTTCTTTAACAATTAGGATAATATAAAGGTTCAAGCATGAATTGTGCTA # Right flank : CAGTACGCTAATCCATTTTATAGAGCGACAATTAACTTGACCGGCGTAGCGACAATTATGTTGGCCGGTTAATCTGCTAAGGTCAGACACAGATAAAACGGAGGGTTTTACTGTGTCTGGTAGTAAGATTACTAAGCAACAAATTAAGCGTTATATGGATTTTAGAAAGAAACACACTCAAGCAGTATCCGCTGCTAAAGCGGGCATCTCTGAGCGCAGCGCAAGGCGTATTGAACACAACCAACTTCAGCCCAAGTCCTCGCAACCACGCCACTGGCGTACTCGTGACGACCCTTTACAAGCAGTTTGGGACAGTATCGTTTTGCCATGGATTCGTGAGGATAATGAGATTACCCCTGTGGGAATCTTTGATTATTTATGCGAACACCATCAAGACATCTTTAGGCCTAGTGCTCGGCGTACCTTGGAACGTCGTATCGCTAACTGGCGAAGCGTCCACGGCAGTCCTAAAGATGTCATCTTCCTGCAGACTCATGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTATAGGCAGCTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //