Array 1 130739-124630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFQT010000004.1 Streptococcus sp. zg-70 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 130738 36 100.0 30 .................................... GACCTAATTCAATTATGAAGGCACAATATG 130672 36 100.0 30 .................................... CAATGAATTAATTTTTGTTGCAGATCCCAA 130606 36 100.0 30 .................................... GAACCATTGCTATTCTAGCCTTATCCTCTT 130540 36 100.0 30 .................................... GAGACACTCATATTCTGATGTGCATGTGTA 130474 36 100.0 30 .................................... TTCTAGCTTCTACTGGTTTAAGAACACCAT 130408 36 100.0 30 .................................... AGTACGGATTCACAAGTTTGGCGATTTAGA 130342 36 100.0 30 .................................... TAGAGTTAGCTTTTTGGTCAATAGCGGAGA 130276 36 100.0 30 .................................... AATTCTTGCCGTACGATTTCCAAGATGTTT 130210 36 100.0 30 .................................... ATAAGGAACGATATACGCTTGCCCTAAACT 130144 36 100.0 30 .................................... TTGACGATACGATTTCGTTCAAACTGGATA 130078 36 100.0 30 .................................... CGCTGTACGATGGTCCATGCGCAGGAGTTA 130012 36 100.0 30 .................................... CTTGCGTGGAATCGAGTGTTTGGTGGAATA 129946 36 100.0 29 .................................... TGCGATACCATTCAATAACAGCATCTCTA 129881 36 100.0 30 .................................... ACAAGAGCTCTATTTCATTCATTAACTGAT 129815 36 100.0 30 .................................... TAAAAAAGTAAAAAAGCCTGACGGCAATCA 129749 36 100.0 30 .................................... TTGAAGCTGGATTGATGGAACGGTATTTGC 129683 36 100.0 30 .................................... CTTTAATTCTATTAATGTAAAGTACTGACT 129617 36 100.0 30 .................................... TAATTTTCGGTTCAGTAGCTCGACGTTATC 129551 36 100.0 30 .................................... TGGTGATAGTATGTTGCCACGCTACGAACC 129485 36 100.0 30 .................................... AAGATACGAGTCAAACCGTCCCAAGCGGAT 129419 36 100.0 30 .................................... GTTCCGTTAGTTATTCATGTGCACGTCAAG 129353 36 100.0 30 .................................... CGAATATCTGGACGAGCTATTGACACAGCA 129287 36 100.0 30 .................................... GGACTATATTGTTTCTATCTTCAGCGGGAT 129221 36 100.0 30 .................................... TTTCACGGTCAGCTCCTTCCGTCTTTCCTT 129155 36 100.0 30 .................................... CTAATGATTGTCACTTGCGCATGTCGGAGA 129089 36 100.0 30 .................................... AGATTGTAGCATATGAGACTTTATCAAGTT 129023 36 100.0 30 .................................... TTTAGCTTACAAAAATATAATACACCTTAT 128957 36 100.0 30 .................................... TCAACCAAAAAAAGAAATGAATATAGGGGC 128891 36 100.0 30 .................................... TAGCTTCTCTGCTTCTGCTAACGCAAGGCG 128825 36 100.0 30 .................................... GGACAATCGCTTGTTTTGTGAGATTGTCAA 128759 36 100.0 29 .................................... TAGCTTCTCTGCTTCTGCTAACGCAAGGC 128694 36 100.0 30 .................................... GTCATGACTAAAAAAGAAATTGACGCATCT 128628 36 100.0 30 .................................... CCAAAAAAGAGGTTAGCCATGAAACAGAAT 128562 36 100.0 30 .................................... TTACAGAAGGTTGGATGAACGATAAAACGT 128496 36 100.0 30 .................................... CGCCTAAAGTTACGAGTGTAGCCACCAACT 128430 36 100.0 30 .................................... TGATGTGAACGAACTATCCTCCTTCCGTAT 128364 36 100.0 30 .................................... CAACTAATTTACTGCCAAACCAGGGCGAAG 128298 36 100.0 30 .................................... TACAGGCGAAACGGAGACCCTGAAAGACCT 128232 36 100.0 30 .................................... GTAAGGGAAGACCATTCCATTTTATAGTTC 128166 36 100.0 30 .................................... CGTTTGCCTAGTAATTCCGCAGCCTTGATT 128100 36 100.0 30 .................................... ACTGCATTGTTTCAATCTTGTCTTTGACTT 128034 36 100.0 30 .................................... TTTCACGGTCAGCTCCTTCCGTCTTTCCTT 127968 36 100.0 30 .................................... GACGTCGGTAGAACGCATATTTCGCCCTAA 127902 36 100.0 30 .................................... ATGGCGACTATCAAAACATGCTGTCAATCT 127836 36 100.0 30 .................................... AATGTCCTTGATTATGGGTGATGTAGAGCA 127770 36 100.0 30 .................................... TTTGAGGCTAGTCCTTTGAGTTTTCGGCCA 127704 36 100.0 30 .................................... TCAGACATAGATAACTTACAGCTTGCGCAT 127638 36 100.0 30 .................................... AGACGATAAACGGAGATTGGTCAGGCGCTT 127572 36 100.0 30 .................................... AGTAATATAATAACACACCTGCACTACTGC 127506 36 100.0 30 .................................... TCAGATTGAAGGGAAGATACCGACACAAAT 127440 36 100.0 30 .................................... TGCCCGACTCGGTCCATTACCGCTTTAATT 127374 36 100.0 30 .................................... GGAAGATATTTGGGTAGCAAACGCTAAATT 127308 36 100.0 30 .................................... AAACTCTCAGAAATCGACCCAGAAACTGAC 127242 36 100.0 30 .................................... GGAAGAAAAACCTGATTATTTGAATGAAGT 127176 36 100.0 30 .................................... CAGATTGCGATATTGATTTTAGAGAATTGT 127110 36 100.0 31 .................................... TGGATAGCTAGAATCATCACCAGCGTTCACG 127043 36 100.0 30 .................................... TTACTTGCTTCATATAATCGCCTTTCTATA 126977 36 100.0 30 .................................... TAGTGAATATGCTCCGTCAGCACTTCTGCA 126911 36 100.0 30 .................................... GCAATGTACACATCTCCGCCTATAAGCAAG 126845 36 100.0 30 .................................... GAAACATAGGCTAGTTTGGGAAGAAGTTCA 126779 36 100.0 30 .................................... AGCGGCCAGCTTTGTATTGTTGTCCACAAT 126713 36 100.0 30 .................................... GATTGCCATGATTGGGGATAACAAGCATTA 126647 36 100.0 30 .................................... ATACCAAGCACGAGTACAACATTGGAGATG 126581 36 100.0 30 .................................... TGTTACAGTTCTTGGAGAATACCAGCCTGT 126515 36 100.0 31 .................................... ATTTTTTCTCCTCACACTCAACGTTTGGCGA 126448 36 100.0 31 .................................... TTACATAACAGCCTACGGACGTGTATATCTA 126381 36 100.0 30 .................................... GCCACACTACGATTATGCAATCGGTGTACG 126315 36 100.0 30 .................................... TGAATTTTTTTCTTGAACTTTTGTTCAATG 126249 36 100.0 30 .................................... TGCGATGCCGCTTTCTAAATCTTCGAGGGC 126183 36 100.0 30 .................................... GGCCAGAATTACGTGGTGAGTGAAGCGGCT 126117 36 100.0 30 .................................... GACCGAGCAGAAAAAGCTAGTCCAAATCAC 126051 36 100.0 30 .................................... CGATAATCTGCATCAGTCGCAATACGGTTG 125985 36 100.0 30 .................................... CAATAAGCCGCTTGTGATGACGCTCGGGAC 125919 36 100.0 30 .................................... AGAAGGCAGCACCAATTGATGTCACTCCTC 125853 36 100.0 30 .................................... TGGTATCATCGTCCACCTCCTCAATTAGCT 125787 36 100.0 30 .................................... ACTGGCAAATCGAGGTCTTGACTGCGGTTT 125721 36 100.0 30 .................................... ATAATTTTTATCCAATTTACGATTGGACGA 125655 36 100.0 30 .................................... CAATATCTCCGACAAAGTAAGCTGTACCAG 125589 36 100.0 30 .................................... TTGAAAGCATGATAAAAGAAATCGCCTTAC 125523 36 100.0 30 .................................... TTGAAAAGGTGACGTATTGGACGAAGGAGC 125457 36 100.0 30 .................................... GTTTACCAACGCAAAACCTCTGACGGACCA 125391 36 100.0 30 .................................... ATGTTTATAAGATTGGAATGACTAGACGAT 125325 36 100.0 30 .................................... TTACGAAAAAATCAATTATTGTTAAGTCTT 125259 36 100.0 30 .................................... ATTTCCCAAAAAGACAAGCACTCCGATACT 125193 36 100.0 30 .................................... TACAAGTTAGTCATTACCACAAGAAAAAAC 125127 36 100.0 30 .................................... CACCATTAATAGCGGGATTCGACTGTTGAA 125061 36 100.0 30 .................................... CGGTATATCACCGTGTCTAAACACAATGCA 124995 36 100.0 30 .................................... TATAATAGATTTACCAGTTATTACATCACA 124929 36 100.0 30 .................................... TTTATTTTGTTTTGTATTTCGGTATAATTT 124863 36 100.0 30 .................................... GCGGACTTCTAGCTTTTGTCGCCCTCTGGA 124797 36 100.0 30 .................................... AGGAACCCCCAAAGGCGCTGCAGTTGATAT 124731 36 100.0 30 .................................... AATGGTATTTTTACAAAAACGCTTCAAATC 124665 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 93 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Left flank : TCAGTTGAATGAAAAACCTGAAGTGAAATCTATGATTGAGAAATTAGCATCAACTATTACAGATTTGATTGCCTTTGAATGTTTGGAGAATGAATTGGATCTAGAATATGATGAGATTACTATTTTAGAGTTGATCAAGGCATTAGGAGTACAGATTGAGACGAGGAGCGATACAATTTTTGAAAAATGTTTTGAAATTTTACAAATCTACAACTACCTACAGAAAAAACGGATACTTGTCTTTTTCAATATTGGAGCTTATTTAACAAGAACAGAGCTAGTGAAGCTATTAGAATATATTAGCTTATCGAATCAGACAGTCTTGTTTTTAGAGCCTAAGAAATTATACGATTTCCCACAATATATCCTTGACCAAGATTATTTCTTAACTGTTGAACATATGGTATAATAAGATAGAATAGTTGGAATCGGTTGGAACGAGAGTCTAGCTGAGACGAATGGCGCGATTACGAAATCTAGTAAAAAATTTTTTCTACGAG # Right flank : TGAAACTTAGAATGATTTTCTAACAAGTATAAATGGATTGGGTGTCAATCTTAATTAGAGGAGTATTTTATTCTAAGATAGTCATTCCTCATAATGATATATTTATTTAATGAGGAACATGGTGAACCACCTAGAGCGATCTAGGTGCTTTTTTCATACAAATAATCTACAGGGAATGGTCTGTATTGTTATTAGTAAATCAGCATGCAGGTGAATGACTAGATGGTGCTTTCCTAGTCATTTTCCACTCTTTTTGGTATAATAAAGAACGGAAAATACAAGAAAAGTTTGTATCTTGTTGTGCTGAATATAGCTTAGGTATTGTGTAAAAAAAGACAGAGCTGTTCTAGCTTTAGTTAGTTGCAGTCTTGCCTCCCTTTAGAGAGAATCTTTCCTAGAATCAAGGAGATTCTTCGTCAAGATTCCTAATTTTTCTGTAGCTGTTGCGAGCTTGCTCGCTTTACAGATACGGATGCCCTAAGGGTATACAGTATGTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 142764-143853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFQT010000007.1 Streptococcus sp. zg-70 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 142764 29 100.0 40 ............................. TTACTGTTTTCATGATATTCATGAGGTTTCCTTCTTTCCT 142833 29 100.0 38 ............................. GAAATCAAAATCAGAAAAATCAACTGTTTTTTCAAAAT 142900 29 100.0 42 ............................. TGAATAGGAAGTTCATTTGTGACTTCAACTGGAGCAGGTGTG 142971 29 100.0 46 ............................. TTAATACGTTTGAACGTTTTGTTCATGATAGGTTTCCTTCTTTCCT 143046 29 100.0 43 ............................. TGTTTCAAGTGTTACTGTGTATGACATAATTTATTTCCTCTTT 143118 29 100.0 38 ............................. GCATGAGCGCTGTAATATTCATAATATTTCCTCCTTAT 143185 29 100.0 43 ............................. AAACGGCCTTTAGTGATTTGAACATGATGTTTCCTTCTTTCCT 143257 29 100.0 38 ............................. TCAAATCCGAAAAGAGATTTTAAAGTAAATGTAAATGT 143324 29 100.0 38 ............................. GTATTCACTAATGTGTCCACCTGGTGAACATACGATTC 143391 29 100.0 53 ............................. TTGCTCCTTAGCCACGTTAACTAACGATTGGATTTGGCGTTCGATGTCTGTGT 143473 29 100.0 38 ............................. AGTCTGTCTTGGTTTTTGATTTTATCTAACGCTTCAAC 143540 29 96.6 37 ...............C............. GCTTTAAAAATTCGTTTTTGAAATACTCAATAAACTG 143606 29 100.0 46 ............................. AATTTAGTTTCCGTTTTCTTTCGTTTCATGAAAAATACCTCTTTTT 143681 29 100.0 43 ............................. CAAGTTCCACTAGAACTTTATCTTCGTTAGATTGAATAATTGG 143753 29 100.0 43 ............................. CAGCAATAAGAACTTGATTTGCAAACATAATTATTTCCTCTTT 143825 29 82.8 0 ......................AAA..TT | ========== ====== ====== ====== ============================= ===================================================== ================== 16 29 98.7 42 GTATTACCTTACCTATAAGGAATTGAGAC # Left flank : CACGCTTCGAACAATCGGCCTTATTCGCTTCATCTAGATTTTGCTGATTATTTCAAGCCTATTATTGTTGATAGGGTCATATTGTCTCTGATTAATAGGCATCAAATCCACATGCCACAACACTTTGAATATAAGGAAGATGGGGCGGTGTGGCTTAATTCAGCTGGTAAAAGAATCGTTTTGGAAGCTTTGGAGAGCAAATTCCATACTCGGCTCGTTCTGAAGCATACCACCTATACCTATCATCAGTTAATACAACGTGATGTTCAACTGTTTAAAAAATTTATTTTAGGTGATAGGGATGTAAAGCGCTTTACACCATTTAAATACTACTAAAAGTCGGTCGAAGATTTTATAAATTGTATTGCAATTTATAAAACAGCAGTAGCAAGCTTTTTGCCTGCCGACCATTAAGCGATTGACCGACTTTTAATACGAAATACTTGAATAGTTTGCATATTTGTACTATAATTAAAGTGTTGACTGCCCTACTTGCAGTT # Right flank : TACTTATCTTGTCTTAGCAGTGTGTAACTGGTGCATTTCATTCTTGACATCATAAAAAATCAGAGGAGGAACTTGAATCCGACCTCTGATTGTCTATTTCTAGAAAGGAGTTACCACTTGTGGTAAAATCAGCCTATAGCTACCATGTTTTTATTCTTCCTTTTCTATTGAAAGGCATAAACAAGGGAGCAATAACAACAAAACTCACTCGCCAGAATTGGGAGCGAATACAAGTCATGGGAGAGTTGCCCTATTTAAGAGAGGATGAAACCATCCACTATGCGCATCATTTCTATTTCAATAAGGAAGCAAAAGAATTGATTCACAGCCCAGTTGTTGAGGGCAAGGAGACAGATGAATTTTCCTATCTCGTTGAAAATTATATTTATAAACCCACTTCTGAAAAGGAATATTATTATCGGATTTCTTATTTTGCTTCAGATGCTGTAGCAACTAGCTCACTTCACTTTTTTGACTTGAAAGTTGACTATATTTTATTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //