Array 1 5629993-5630844 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPG01000001.1 Rubinisphaera italica strain Pan54 Pan54_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5629993 37 100.0 38 ..................................... GAAACGGTACACCTTCTGGATTCAATTGCCCACGCTCC 5630068 37 100.0 37 ..................................... ACGCTAGACAGGATTCGTTCCATAAGCTGAAGCTTAG 5630142 37 100.0 35 ..................................... AAGAACCCTGCATTCGGAGTGTGCGAGAGCCGTCC 5630214 37 100.0 37 ..................................... AAACTTCCCCTGCCCTGAGGCTGTATGCCTCACTGCT 5630288 37 100.0 35 ..................................... TTCAATGTTGCCACCGATGCAAATCTTTTCTCCAC 5630360 37 100.0 37 ..................................... ATGCACCCCCTCTCCATGTGGGTGATTGTCCAGAACA 5630434 37 100.0 37 ..................................... CATTAGGTCCGACTCGAACGACCGTGATTTCGATGTT 5630508 37 100.0 38 ..................................... TTATAGTTCACAACGACCTGTCCGAAGACTTCGGTTGC 5630583 37 100.0 37 ..................................... TTCGAATGCTTCAATGGAGCGTTCCCTCGCCCTGCCT 5630657 37 100.0 39 ..................................... GTTTCCCTCGCGCCCCATCTCCTCGGGGAACATGTCCCC 5630733 37 100.0 38 ..................................... CGGGCAACCGAGAGATGGTTATTTTTATGGCTGCCACG 5630808 37 97.3 0 .......................A............. | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 37 GTTGCATGAAGCGTTGCCCGCTTGAGGGCTTTGAAAC # Left flank : GGGTTACAATCCCAACAGTTGCATGAGCTGTTGCCCGCTTGAGGGCTTTGAAACGCTTATTTAGCAGTTCTTGCAGTCGGTTCATTTCGCTGTTGCATTAAGCGTAGCCCGCTTGGGGGCTTTGAGAAACAGGGCCGATGTCCTTGGGCTTGCCGTTCTGGGAAGCGTGATGGAATTGTTCTGTTTGACAGTCCGAAATCTCTGATAAGCCAACTCTATCAATCGATTCAGGAGTATATCGCCGAACTTCCGCCGTGGGATGGAATTTGGCTGGAGCGCCCAGGCTCTCCATAGTGACGGAAAAACCCCGCATTGGCGCGCAAAAGTTGGTCAAAAACGGTGAGGGCCTGACATTTTTGTAAGTGACTATTAGGTAACAGGTTATGAAAACGGAAAATGGAATTTTTGAGTTTGGCACGGAATTTGGGTTGATTTTTTCGGGAGGGTCTGACATTATGCCCCTGCAAGTGCTTACGCGGCATGGAGTTAAAATGACCGCC # Right flank : CTTCGAGACGCACCCGATACCAGTTTTTAGAACCGAGGTTGCATGAGCTGTTGCCCGCTTGAATGGCCGAATAGAGTTTTATCCTCCCTTGTAAGCAGTGTTCTCAATCTATTGAAATCAGAAATAATCCGGCAGGAGTTCGACTCCGCCGGATTATTTCTTTCCATGCTGGATTTCCCTGGCTCGTTCAATGATGCAGCCGCTTGCTTGATCCGACGAAGTCTCTTTCTGAGCCTCACCTTTCTGATGTCTGCAAAACCATATTTCTTCTGCACCTAATGAGCGTTCTCTGACTTATCACTTTTGAGTCTCTCAAAAATGACATTGCACGTTTGTCAGTTCGTAAACCGTATTCTTCAAATACGGAATGCTCCTTCACTGCAGTTGCCAAAAAAAGATTATCAAAACTGAGCTCTCCTATTTTTTCAAAAAGTTATGCCGTTGCTGTCATTTGAAGCGGTAGGTCTTCGAAATAATAGAGAGGAAACTGTTTTCCTCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATGAAGCGTTGCCCGCTTGAGGGCTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 5634622-5635252 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPG01000001.1 Rubinisphaera italica strain Pan54 Pan54_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5634622 37 100.0 38 ..................................... TTGGGGTTGCTCTTCGGGCTGTTTTCCTCGCCGATGAT 5634697 37 100.0 35 ..................................... ACGTCGAGGCCGAGTTCATCCATCTTCACTTCCGT 5634769 37 100.0 37 ..................................... GAAGAAAAACTCCACGGTGCGCGAGAAGGTGATCGTC 5634843 37 100.0 39 ..................................... AGCTTATTATGAATATGTATCCGTTGGGTGACATGCACC 5634919 37 100.0 37 ..................................... GACTTCCTCCAAGCGGAAGAAGTCAGTGCGATACTGG 5634993 37 100.0 36 ..................................... AAGCACCCTCCGTCCGGATGACGGCACAGTCGGACC 5635066 37 100.0 39 ..................................... ACAAGATCCCCCACCTCGAAACGAATATCATCACGCAGA 5635142 37 100.0 37 ..................................... AGGATGGCATAGAACGCGTTCCATGCCTGCGGGGTAT 5635216 37 86.5 0 ................................ATTTA | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.5 37 GTTGCATGAAGCGTTGCCCGCTTGAGGGCTTTGAAAC # Left flank : AGCTCTCTGGCGTGCGATTTGATGGAGCCGTTTCGCGCGAACTGTGTTGACCAGCCTTTGCTGGGATTACTTGCCAGAAAAGAAGTGACTCTCAATGATTTTGAGAAGAAAGAGAAGTCAGAAGCGGTTATCATTAAGGAAGATGCCCGTAAGCGTTGGCTTGGTGTGCTTGAGGCGACCATGTATGAAGGCAAAAAATCTCAAAGCAGCCAGCTTCATCAGTCGATTCAGGAGTATATCGCCAAACTCCCACCATGGGATGGAATTTGGCTGGAGCGCCCAGGCTCTCCATAGTGACGGAAAAACCCCGCATTGGCGCGCAAAAGTGGGTCAAAAAGGGGGAGGGTCTGACATTTTCGTAAGTGACTGCCAGGAAACAGGTTATGAAAACAGAAACCGGAATTTTTGAGTTTGGCACGGAATTTGGGTTGATTTTTTTGGGAGGGTCTGACATTATGCCCCTGCAAGTGCTTACGCGGCATGGACTTAAAATGACCGCC # Right flank : ATTGCAATAAGATGGTCAAAGGTGCAATTATTTTGTTGATGGTATACTTACCACGAATATCTGATTGGGTACGTGGATTGTTTTTGTCATCTCTAAAGAATGTACGTGCAACCCTGCTCGGCTCTGTTAGGCAGGAGACCAGCAGTATTACCGTTAAGGAATAGGATGCTGCCTGCAATAAGAGCAAGTTCACCTTGCAGTCGTTGCCGTCGCAGGAAATGGCAAGAGATCGAGCGTTAAACTCAAACAAGCCGTTTAGGAGCGTTATACCGGCTCGCAGTCATCACTGATCGAAGCTGAGAGGACAGACAGCAACCACAGCCCTCTGAGTGATGCGGATGTTACTCTGCGGGAAGTTCGGAAGAATCCCATGCGAAATGATAGCGTTTCGCGGAATCGTTTTGGCGCTGTGCGTAATGGAAATGGTCAATTTGCCAGTATCGGTCAGCTTGTTGACCTAGCAAGGTCCCCAAGGGAATCGGGGCGGCAACGAAAAAGGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATGAAGCGTTGCCCGCTTGAGGGCTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 5647385-5648527 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPG01000001.1 Rubinisphaera italica strain Pan54 Pan54_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5647385 37 100.0 35 ..................................... TTGAGTTCACTAGGCCAAACGATGGGGGAGCCATC 5647457 37 100.0 38 ..................................... TTCATCTCATCTCTCCTAAAGAGAATAGAACCTCCCCC 5647532 37 100.0 38 ..................................... TGACTTCCGGAGTTATCTACCGCTGGAAGGTTAATAAT 5647607 37 100.0 35 ..................................... GGTTGTACCACTTGCCGTTTAACTCCTGATCCACA 5647679 37 100.0 36 ..................................... ATTGCACGGAACCAACTCGTCGGCCTCTTCGATCTT 5647752 37 100.0 35 ..................................... GACCCGTACTGGCCTCCACATCATGCACAACCCCA 5647824 37 100.0 38 ..................................... TTCATGACCTAACGATAACTTTAGCTATCATAATCTAG 5647899 37 100.0 37 ..................................... TTCTTGTCCTGACTTCGTCGCGCAGCTTCTCGGGCTG 5647973 37 100.0 39 ..................................... GTCGGAACCAGCAGCACGTGGCCGGGGCCTGGAACCGAG 5648049 37 100.0 37 ..................................... ATCGATCAACCTTCTTCTGGCTCCGCCAGTTGCCGAT 5648123 37 100.0 38 ..................................... ATCCAATACAACCAGACCGACATAACGCCTACCATTGG 5648198 37 100.0 33 ..................................... TCGCCTATACATAATTTTTCTCCTTGCTCCATC 5648268 37 100.0 37 ..................................... TTCGCCGTCACCTCCACATCTTGTGAGGTAGCGGCTT 5648342 37 100.0 36 ..................................... TTTTTCCCCTTCCACACCGCAACTGAGCACTGCGTT 5648415 37 100.0 39 ..................................... TTGATGAACTGAAGGCCTCGGTTGTCCTTCTCGGATTGT 5648491 36 78.4 0 ...........-..A......C......T....TTGG | A [5648499] ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 98.7 37 GTTGCATGAGCTGTTGCCCGCTTGAGGGCTTTGAAAC # Left flank : GCTCGTCAACTGGCCGTCCCCGTCCAGTTGGGAGATGAATCGCTGGATCGGGAAGAGTGGCAGCGGTTCAGTTCCACGCACGGCACCCATCGTCTGACCGGATTATCGGGCCAGGTGATCTTAAAAAACATTTCGCCAGAGCTTTGGGTCTACCTGCAGTTGGGACAATTCATTCATATCGGCAAGGGGGCCAGTTTTGGGCAGGGGCGATACCTTTTACATCCGCTGGAAAAGCCTGATCGTGACGAGTTCAGCAGTGAGTCATTCACCCCGAGCCTCGCTTCTTACCCAGAGTGACGGAAAAACCCCGCATTGGCGCGCAAAAGTGAGTCAAAAAGGGGGAGGTTCTGACATTTTTATAAGTAATTGACAGGAAACAGGTTATGAAAACGGAATGTGGAATTTTTGAGTTTGGCACGGAATTTGGGTTGATTTTTTCGGGAGGGTCTGACATTATGCCCTTGCAAGTGCTTACGTGGCATGGATTTAAAATGACCGCC # Right flank : GGATGAAGAATCTGTGAAGAGTCGTCGTGCAATCTTTGGGAAATTGAAATCATTCTCACCCGCACACTTGATCATCTGTTAAGTAGAGGTCTAGAATCAAATTGTCTCTGCTGTCGGCTCATGTCGCAGAGATCTGTTGCTGGATTGTCTCGCTGGAGTACCTCACGCTGAAGGAGATCTCGTGGAAACATTCGTCTGGTTCACACAGGCAGACCGCTTCGCTCTTGCCGAAAAGTTTCAACAGTTACAACTCCAGGAATGCTGGAAGAACGTGGAACCCAGGCTGGCAGAATTGAACTCCGACAGTGAAAAAGATCTGGTCAAAGAACTGCAGGAAATCCTGATCTCCTTCCTGAATACGGATCAAGCCGAACGCAGTTTGCAGGCCTTCACATTCCAACTGACAAGAACCCGCTGGCGTCGGATCAAAGCGTCGATCCGGCTGGGACTGATCGAAAAACAAAAACCGGAGAACCCATCTCTCCCTGAACATCTTTCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATGAGCTGTTGCCCGCTTGAGGGCTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 5675404-5678600 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPG01000001.1 Rubinisphaera italica strain Pan54 Pan54_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5675404 36 100.0 36 .................................... ATGGGGTTTCAGTGGTCTGCATCTTGTCACTTCCTT 5675476 36 100.0 36 .................................... TTTATGAAAAAGGTTTTGAGTTATGAGTAATTTAAG 5675548 36 100.0 36 .................................... TAATTGTGATTGACCATTTCCGTAAAGTAAGTTACT 5675620 36 100.0 37 .................................... TGTTCCCACAAGATCCGAAGAATTCACGATGCCTGTC 5675693 36 100.0 35 .................................... CACGTGGATGTGACAATGCACATAATGATCGCATC 5675764 36 100.0 34 .................................... CCGCTCTTACAACGAACGTAACGATTGTGCTGTC 5675834 36 100.0 36 .................................... TAAAATATCTTGAGTTGATGCGTACACAATACCGGT 5675906 36 100.0 35 .................................... AGTCGTGCGATGGCGACGCGAATTTGTTCATTAGT 5675977 36 100.0 34 .................................... CCTTACTTCTGATCTAATTACACCCATATCAGCT 5676047 36 100.0 37 .................................... TCTAATTTCCGTATGCTCCACTTCGTTCCTGTCTCTG 5676120 36 100.0 35 .................................... ATGTTGGACAGTTCCGGCTCCATCACTCCATCAGT 5676191 36 100.0 36 .................................... AAGTTTCCTATGTTAATTTTCTCATTTTCTGGAATT 5676263 36 100.0 37 .................................... GGTTGTGGTTTCATTCTATCAATCGAAATATCGTGAG 5676336 36 100.0 37 .................................... TTGTCAATTGGCCCAACTACTTTTCTTTCCGCTTTTT 5676409 36 100.0 35 .................................... ATCTTGATGGTGATGACTACGGGGGCTTGATAGAA 5676480 36 100.0 35 .................................... AGTCTCAACACAAGATGCATTCAGGTTCGCTCAAC 5676551 36 100.0 37 .................................... AGTTACTGCTGACGATGTGTGGGTTGCACCCTGCCTT 5676624 36 100.0 35 .................................... GGAAAGATTCGCATAATAGCGACGATGTTCCACAC 5676695 36 100.0 36 .................................... GGTAGTGGGCCTGACAAGGTAAGTAAAAACGGATGT 5676767 36 100.0 35 .................................... AAGTTGTGCCATCGTCTAATCCTCCTGATTATTTT 5676838 36 100.0 37 .................................... ACGTTATGTCAGCGAAAGAAAATTACGGATGGGACAG 5676911 36 100.0 36 .................................... AATGCGTTACGGATATCATCATTGTTCGCAAGTCGG 5676983 36 100.0 37 .................................... CGTAGCTGCAGGGCAAATACCATCTGGACCTGAGATT 5677056 36 100.0 36 .................................... GATCAGTCAGCAATTCCCAATTCGTCGAGTCTTCTT 5677128 36 100.0 38 .................................... CGTCGGCGTATGACCCTCGTGAATGGCTCGATACATCC 5677202 36 100.0 37 .................................... CTGATCAGGTTCAAGAACTTCTGAAAGCCATCGGGGG 5677275 36 100.0 35 .................................... TCATAACTAGACACTTTCCATTGTTTGCCGAATAA 5677346 36 100.0 36 .................................... CGCGGGGTGGCATCTCTGGCGACTGCTTTACCCTAT 5677418 36 100.0 36 .................................... CAATATTGCAAGCAGTTCAACCCTACGCATGTATCC 5677490 36 100.0 36 .................................... CAGCCATTTCCAAGTGTTCTGTTTCATCTGTTTCTC 5677562 36 100.0 35 .................................... AAATTTAATTTTGCGAAGAGCGTCCTGATAATCAA 5677633 36 100.0 38 .................................... TCGTCCGTCGTGCGAGCCGCATCGTAATGTGCGTTAAT 5677707 36 100.0 36 .................................... GGCCCGAGCTGCGATAATGGTGAAGTTGCAGCGGCT 5677779 36 100.0 36 .................................... ACTAACGTTGGTAAATATCTCTCTGAACTTAGTTGG 5677851 36 100.0 36 .................................... AGATGACTAATCCGTATTTAGACGATACTGACGCTG 5677923 36 100.0 36 .................................... AACTTTATTTCCTTCTAGATCAACTAATCCTCGTTC 5677995 36 100.0 37 .................................... TGCAATGTGGGGTTCTTGCAAATCAGGAACTACACCG 5678068 36 100.0 36 .................................... CCTTTGAGTCATCCCAAAGGTAGCAATTTGCGTTTT 5678140 36 100.0 35 .................................... TTCTGATCATCCTTGCGTTTTCCTCTTTCGTTCGT 5678211 36 100.0 24 .................................... CGCAGCAGTTTTCGCAGTAGTTTT Deletion [5678271] 5678271 36 100.0 37 .................................... TATGGGATCGAAAAAATGCCGAGGATTAAACTTCCAC 5678344 36 100.0 36 .................................... AATAGCAACGCTGATCAAAGCTGGGTTGTTCAAGAC 5678416 36 100.0 35 .................................... TGAAACTCATTAGACTACCTCTGGGAGTGTCTTTC 5678487 36 100.0 41 .................................... TTATGAACCGGGCTGCTGCCGATTATCACTCCCATGTTGAC 5678564 36 77.8 0 .....................T..AA.G.C...TTT | G [5678593] ========== ====== ====== ====== ==================================== ========================================= ================== 45 36 99.5 36 GTCTTCCGTCCTGAAAATGGACGGCCCCATTGAAGC # Left flank : AAATTCAACAGGAGTGGACCATGCGGACCGTCTATCTCATTTCTTACGACATCACCTGCCCGAAGCGATACCGACAAATCTACAAATCGATGAAGGGGCACGGCGAGCCGATGCAGTATTCGGTCTTCCGCTGCGAACTGAGCGACATGGAATTACAGCAACTCAAAGATGCCCTCTGGCCGGTCTTGAACCTGGACGAAGATCGTGTCATGATAGTCGACCTCGGCCCGATCGAAGGCCGAGGAGACGATTGCATCGAATTCTGGGGCGAACCAATCGTCGCCGTTCAACCAAGAACAGCGACAATTATTTGAGAACAATCCGGTTCGAGCGGTCCAGTGCCGCAAAAACCCCCGGCAGCCCTCGCAATCGTAACCTGTTCCTTGGCAACCAGATACAAAAATGGTAGAATTGGATCATGCAAAATCAGCATCCCAAACCAACAGCCCTCGCAAAAGAGACGCTAACCCCCTGCCAGATCAAAAGATCAGAGGCGGGCG # Right flank : TATTATCACACAACACTAAGAACGCAACAGTTGATTCAAAAGTGGATTCAAAGCAAAAAGAGACATACCCATGCATGAGTATGTCTCTAAAGAAATTTCCTAATTAAGTTGATGAAGAAAGAGCAGTTTTTAGGTTGCTAAGCCCTTCTATTACTGGGACTGTCCTGAATTATTGAGATGGAGTGTTTTTCGGCGGTCTGGGGCTTTAACTCCCCTCTCAGTATAAACTTCATTCAACCACGCACGAATCTGAACATCAGACACATCGCATTTCTCAGCAATGGTTTTCAGTGGCATACCGGACTGATCCCATTCAAATGCTTTCTGTTTCATTTGCTTTCGATGATCAGCAGTCGTTGGAACAGGGAGATCACTGGATTGAAACCAGAAATCAATTGCCTTTTTCACAGTCGGTGAACTGCAGTCAAACTTTTCGGCGATTCTGGCAAGCGACACTCCCTGCTTGAAATCCTCGGCGACCTCATCGGCGATCTTTTGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCGTCCTGAAAATGGACGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //