Array 1 2590-3438 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BCXX01000044.1 Bifidobacterium breve strain BR-L29, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
      2590	    33	 100.0	    34	.................................	CTTGGCGAGCGCGGCCTGTGTCTTGCGATGCCGT  	
      2657	    33	 100.0	    35	.................................	GTCGCAGGGTGGCGTGTCCGACAAGGACACCGCTC 	
      2725	    33	 100.0	    35	.................................	GATTCCCGTGTCTCGGGCCGTGCGCCCTGCGCCAT 	
      2793	    33	 100.0	    35	.................................	CTCCACGGGTCTGTCCGCCATGATTATGCCTCCGC 	
      2861	    33	 100.0	    35	.................................	GCGCTAATCCCCAGTGGGGTAATGGTGATTGGATA 	
      2929	    33	 100.0	    34	.................................	CACGACACCACCATCCGATATTTCAACCGAGTCG  	
      2996	    33	 100.0	    36	.................................	TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG	
      3065	    33	 100.0	    36	.................................	CATTGTGAGTGTAATCGGCAGTGTTGGTTTTCCCAT	
      3134	    33	 100.0	    35	.................................	CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 	
      3202	    33	 100.0	    35	.................................	AGTGGATGTAGCGGACGCCACTTCCGGCTGCGGCC 	
      3270	    33	 100.0	    34	.................................	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC  	
      3337	    33	  97.0	    36	....A............................	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC	
      3406	    33	  84.8	     0	.............T...........G..CCT..	|                                   	
==========	======	======	======	=================================	====================================	==================
        13	    33	  98.6	    35	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                    	       

# Left flank :   GCCCCTCTCCGAAACGAGCCGGTCGTACACGCGCTTGGCGGTGTGCCGCTGCTTGCGCGGCATGAACCGGTCCGCCTCCAACCACCCGTCGACCGTCGCCTTGAACGGGTCGAGCTTCGACGGCCTCGATGCGGAGTGCTCCGGCTTGGGAGAGCAATCCTCCCTCCCGGCGTATTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTTGCGATGCTTCTCCATGACACGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAACCGAATGGTTTGCTTCCGACTCGGGAAACTAGTACGGGCAGGACGGGCCGGTGTTCATTTCTCGCCACACGCTGAAATGGACTAAAACCTGCCGCTCATCTGGAGACTTTCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACAGATTGAAATAACCTCCTGTCCGACTATGGCGACGCGGTGGTGCGC
# Right flank :  TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC

# Questionable array : NO	 Score: 9.19
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-8.50,-8.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.64   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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