Array 1 1997753-1992300 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015970.1 Acidipropionibacterium acidipropionici strain F3E8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 1997752 36 100.0 38 .................................... GTCCCAGTGCATCCCGGCCTGGACGACCCCGCGCGGTC 1997678 36 100.0 36 .................................... CGACTACGAGGTGCTCGGCGATGGCGCGGATGACGA 1997606 36 100.0 37 .................................... CTCCTAGTAGTGAGGTGTGGCGGGGGGGCGTCACGTA 1997533 36 100.0 35 .................................... GAGCTGGTAGTGACGGACAGGTCGTCCACGCGGAC 1997462 36 100.0 37 .................................... CCAGGTCCTCACCGACTTTGACGTGCGACTCGTAGGA 1997389 36 100.0 36 .................................... CGTCGACTTGGCCTTCACCGCGCAGCCGGGCAGACT 1997317 36 97.2 38 ...............C.................... CTTGAGGACTGCTGGCTGCACCACAGCAACGTCAACCG 1997243 36 100.0 37 .................................... CGGCATACATCGCCGAGCACGGATGCCCGCCCGGCAC 1997170 36 100.0 36 .................................... ATGCCCGCAATGCAACCAGGAAGACGCCAGAGCCTC 1997098 36 100.0 35 .................................... CGGTCCGCCCACCACGCCGGGGGCTCGCTCTCGAA 1997027 36 100.0 37 .................................... GCGCACACCTGACCACCACGAAGACGTCGCGCCATGG 1996954 36 100.0 38 .................................... TCCACGGTGCGCACCTACGCATCGACCGTCCACCGCTG 1996880 36 100.0 34 .................................... CGGAAGTCATCATCGTCAGATTGACGAGCAATTG 1996810 36 100.0 38 .................................... GGCCAGAACTTCGCGATGGTGCCCTACTGGCTCCTCAT 1996736 36 100.0 35 .................................... TAGTGGGCGCTACCGCCCGAGCTGCTCGACTGGAA 1996665 36 100.0 36 .................................... GCGCGCCCAGATGGAGGAGCCACTGGCACGCGACCT 1996593 36 100.0 35 .................................... GGGAAGTCGATGGTGAACAGCCTCAATCTGGCGGC 1996522 36 100.0 36 .................................... GCGCCGATGGTGCCATGATCGGCCCAAATTTGGGAT 1996450 36 100.0 36 .................................... ATGAAGGAGGCGGCATGAGCGAGGCAGTGCAGGAAT 1996378 36 100.0 36 .................................... ATGAAGGAGGCGGCATGAGCGAGGCAGTGCAGGAAT 1996306 36 100.0 36 .................................... TTGGGCGACCGATGGCTTCGATTCCACCATCACCGT 1996234 36 100.0 37 .................................... ATGGCCGGGATCCCCCGGGAAGCGCGGCGTCGTGGCC 1996161 36 100.0 36 .................................... CGGCTCAGTCACAGCAGTGTCATTCGGTCCCGGCCA 1996089 36 100.0 37 .................................... ACCTGGACCATTCCGCCGATGCCGATGTTGGTGACAA 1996016 36 100.0 35 .................................... ATCGTCACCTTCAGGCCATCCTCCGACACGTCCGT 1995945 36 100.0 39 .................................... TTCTGAAGGAAGAGCTTCAGGCATTGCACACTCCTAAGA 1995870 36 100.0 35 .................................... GCCGTCAGCGACTTGCCCGAGCCATTCGCCCCGAC 1995799 36 100.0 35 .................................... GTCGTAATAAGTCATACTTATTCCCCATCATCGTC 1995728 36 100.0 36 .................................... TTCCTGCCCCATCAAATGAAGCGAATCAGTATCAGC 1995656 36 97.2 35 ....T............................... TCCGGATGACGACGTTTCGCGCCTATTTTTAATAC 1995585 36 100.0 35 .................................... GTGACGGCGTATCGGGAGGGGTACGACGGGCTAGG 1995514 36 100.0 37 .................................... ATGGGGCAGGAATTGCCGGACCTTGATATTCATGATT 1995441 36 100.0 36 .................................... CGCAGTACTTCGAGCCCGAATGGACCACCGTGTGGC 1995369 36 100.0 35 .................................... TTCTCGGCAGCCAGGGCTGCGCGGTTGATGGCTGC 1995298 36 100.0 33 .................................... TTGGCGCGGGGCCGGGCGGCTCCGCCTTGATTA 1995229 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1995158 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1995087 36 100.0 35 .................................... ATCTCGATCAGGTCGTCGGCGTCATGACGGGCCAA 1995016 36 100.0 37 .................................... ATGGGGCAGGAATTGCCGGACCTTGATATTCATGATT 1994943 36 100.0 36 .................................... CGCAGTACTTCGAGCCCGAATGGACCACCGTGTGGC 1994871 36 100.0 35 .................................... TTCTCGGCAGCCAGGGCTGCGCGGTTGATGGCTGC 1994800 36 100.0 33 .................................... TTGGCGCGGGGCCGGGCGGCTCCGCCTTGATTA 1994731 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1994660 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1994589 36 100.0 35 .................................... ATCTCGATCAGGTCGTCGGCGTCATGACGGGCCAA 1994518 36 100.0 35 .................................... TTCTGTCCTGGCCGCCCGGCGTAGGTGGTGATGGC 1994447 36 100.0 40 .................................... TTCCCGCCCTGATGGCGTACTTCACGGCGGCGCCACGAAA 1994371 36 100.0 36 .................................... GTTCGGGATCTTTTAATAGGGGCGCCCGCGCACTGT 1994299 36 100.0 37 .................................... CCCGCGACATGTCGATAGCCATTTCAGCCACCTTCCA 1994226 36 100.0 34 .................................... GTATGTGCCGGTCTGCGCCAGAGTGGATGATGCG 1994156 36 100.0 35 .................................... ATCGGGACGGGGTCGATCAGGTCGGTGCCCAGCTC 1994085 36 100.0 35 .................................... TCCTCGGCGGCCTTGACCTGTGAGGAGCCGGCGGA 1994014 36 100.0 35 .................................... GCCGACCGCATCGAGACCGAGTCGCAGTGGCCGAA 1993943 36 100.0 35 .................................... TGCTGTGGTGGCGCCCGGGGCCTTGGTAGCGACGA 1993872 36 97.2 34 ..........................T......... GTTTGGTGGCCTGTTTTCCGGACTTGGCTGTCCA 1993802 36 100.0 34 .................................... CGGCGGTCACCCAGTGGGGTCCGTCGTCGGGCAG 1993732 36 100.0 38 .................................... TCCGAGATCCAGCCCTCGTGCTCAGCCTGAGATGCGGC 1993658 36 100.0 52 .................................... ATGACGGTCCCGTCACCACCGTCGTCTTCGAGACCGACCGCGTCGTCCCCAC 1993570 36 100.0 39 .................................... CGCTGGGCATCGACTACGGCACCAACCATCCCACGGCCG 1993495 36 100.0 36 .................................... GCCGAGGAGGTGTGAGGAGAGAGATGTAGGGGACTC 1993423 36 100.0 38 .................................... GACACGTCCAGCCTGCCAGTCGGAACCGTGTTCGGGCT 1993349 36 100.0 37 .................................... GTGCCAGGTGGCGAAATGTCATCGGCTTCGGCCACGG 1993276 36 100.0 35 .................................... GCGAGAGGGTCTGTCGTGAACTCATGGCCAGAACG 1993205 36 100.0 36 .................................... CACACGACAAAATATCCAAATAGTATTGTTTTTCCC 1993133 36 100.0 36 .................................... AGAGCGCGACAGGGGCCGGTCGATGGGGTCAAGCCT 1993061 36 100.0 38 .................................... TTGTCGCGCCACTCCCGAACGCCGGCCGCCCCGTCCTT 1992987 36 100.0 35 .................................... CAGCGACGGCGGAATGGACACCTTCATGTCCTTCA 1992916 36 100.0 37 .................................... CAGACGGCGCAGATGACACCATCGCCTCCGTCCTCGC 1992843 36 100.0 37 .................................... GTCCTGGTCCGGGCCCTTCACCGGGGGAGTAGTGTCA 1992770 36 100.0 34 .................................... TGGGATCTGGAGGGTGAGCGCCTCTATGAGACCG 1992700 36 100.0 37 .................................... TGTCGCGGCCGTAACCTGAGCCTGCACGGCTGTGGTC 1992627 36 100.0 35 .................................... AGCCAGCGCTCCGGTGGCAGGTACTGGCCGGTCGG 1992556 36 100.0 38 .................................... TTCGACGTCACCGAGATGATGCAAACCGTCGGCTCGGG 1992482 36 100.0 37 .................................... CACCCGATGGTGCCTGGCCGTCGGAGTCCTCAGCGAG 1992409 36 100.0 38 .................................... CGGTCGGTGGCCCAGCGGAAGGCGCGGATGTAGGAGTC 1992335 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 76 36 99.9 36 GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Left flank : GCACCACGAGTCTGTTCGCCGCCCTGGACGTCGCCTCAGGGTCGGTGATCACCGAGCACCACGCCCGCCACACCGCCGCCCAGTTCATCGGCTTCCTGGCCACGATCGACAAAGCGGTACCCAAGAATCTGGAGCTGCACCTGGTGCTGGACAACTACGCGACTCACAAGACCGCGAAGGTCCACACGTGGCTGCTGCGTCATCCCCGGTTCCACCTGCACTTCACGCCCACGTACTCGTCGTGGCTGAACCTGGTCGAGCGGTGGTTCGCCGAGTTGACCTGCCGCAAACTCCACGGATCGGCCCACCGCTCCGTCACCGAGCTCAAGGCCGACATCCAGGCCTGGATCAACCAGTGGAACACCGACCCGAAACCCTTCATCTGGACCAAGACCGCCGACGCGATCTTCGAGTCCCTGGCCGCCTACTGCACCATCCTCAACCACACCACCGACCAGCCAGAAACTTCCGACTCAGGACACTAGGTCATTCCACCGCCG # Right flank : AGCGCTCGCGGGCAGGCCCTCCTGACAAGCCGGATAGTGCCCCGCCCGCGCGCGACCACTCTATCGCGTCCTCTCCGGAGCAGGACGCGCGGCCATCTCTACTGCAAATGAGGGTCCGACAAGGGAGGGCGCCTACGCGAGCGGTCCCCGGCAGTTGGTGGAGCCGGGGACCGCTCGCGCGACCTCAGACGATCATCGTCCCGTCCCCGACGATGTATCGGGAGTGGCCCAACCACGTCATCGCTCGTGCGTCTGCTGTCTTCGAGAGGCCAAGATCGCTGACGAGTACGGAGTCCTGGTCCCGGTCCATGATGTCCTCCAATTCGCGTTGCAGAACGAGTACATGACTCGGCGAGCAGTCCACCATGAAGACGCTGTACTGGACGCGCAGCCCGAACCGCTTCAGCGCTATCGCCATGTGGCTGCGTCGTCTGTCATCAGGTATGTCGTAGGCGACGAGGAAGCGATGGCTATCCTGCCTCATCGGACGGTCATCCCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 2000363-1998949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015970.1 Acidipropionibacterium acidipropionici strain F3E8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2000362 36 100.0 41 .................................... CTCGAGAAGGCACAGGTAGCCCAGGCCAAGAAGGCACTCGG 2000285 36 100.0 38 .................................... CGCACCAAGTCCCTGAGGGGCGGGATGTTCCGGCGGGA 2000211 36 97.2 37 .........................G.......... GGGCCACCGTCATCGCCCGCACCGAGCAGCTCGACGC 2000138 36 100.0 34 .................................... CTGTCGGCACCGGCTCGCCCGTCCTGCGCTGGTC 2000068 36 100.0 35 .................................... GTCCAAGCTGATCGGCCTAGGTCATTCCACCGCCG 1999997 36 100.0 35 .................................... GCCGGGTGTGATGCGGGGGGATATCCGAATCCCAC 1999926 36 100.0 35 .................................... CTGGGGAGGGTGGCGCGGACGCTGGCGACCCATCC 1999855 36 100.0 37 .................................... AACCCGCCTTCTGGTCCAACGGGCAGCCCAAGCTCAT 1999782 36 97.2 35 ...........................A........ AGCGCGCGTCCTGATGCGCTAGGTGCAACGATCTG 1999711 36 100.0 37 .................................... AACCCGCCTTCTGGTCCAACGGGCAGCCCAAGCTCAT 1999638 36 97.2 35 ...........................A........ AGCGCGCGTCCTGATGCGCTAGGTGCAACGATCTG 1999567 36 100.0 39 .................................... TGCCATGCGATTCCTCCCTGTCTGTGTGGTGCATTCGCC 1999492 36 100.0 37 .................................... AGGACGATTCGAAGCGGTGGGAATGGTCCACCAACTA 1999419 36 100.0 35 .................................... GTGACGGCGGCGGGGTTCTGTCCTGGCCGCCCGGG 1999348 36 100.0 37 .................................... GGGTGATCCAGCGCAGCACGGCGGCGCGGGCCACGTC 1999275 36 100.0 37 .................................... AACTCCGGTTTCATCCCGCGCATTTCATTCCATGCGA 1999202 36 94.4 37 ............................AA...... CCGCGTTGACGATCCGCCGGAACGTCTCGCTCTTCTT 1999129 36 97.2 38 ..........................T......... AGGGCGAGCGCACGGGTCGACTCGCTGGAGAGCTGGGT 1999055 36 100.0 35 .................................... GAGCGGCGGTAGGCGTGCGGCTGAGACGGCGTGCT 1998984 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.0 37 GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Left flank : CCCCCTGTTCGGGGTCAGGCTGACCCTGCACACGGGCCGGGACCTGCTCACCGACCGGCAGGCCGCCCGCCTGGATGCTGTGCTCGCCGATGACGCTCACGCGCCGGTCCAGGTCACCTGGGCGGTCTACCAGGAGGTCGTGGCCGCCTACCGCGCCGAAAACCGTGCCGAGGGGCGGGCGATCATGGCCCACCTGATCGACGCGATCGCCACCAAAGTCCCCGCCGCACTGCCCGAGGTCATCACTCTCGGCCACACGTTGAAGAAACGGGCCGCCGACATCCTGGCCTACTTCGACCACCCGGGGACCTCGAACGGCCCTAGTGAGGCCATCAACGGCAGACTCGAACACCTCCGCGGTATCGCCCTGGGCTTCCGGAACCTCACCCACTACATCACCAGATCCCTCCTGGAGACCGGAGGATTCAGACCCCGACTACACCCTGGATCCTGAAGAGCCGCGATGCGCCAAGTGCGGCCAGCACGGCCGCAGCAGCCGT # Right flank : GTCCAAGCTGATCGGCCTAGTGTCCTGAGTCGGAAGTTTCTGGTTAGTCTTGGTAGACTCTGGTCATGCCGAGTCCCAAGACTGAACCCGTGCACCTGACTGGCGAGGAACGTGCCGTCCTGAAGAGCTGGGCCCGTGGCCGCAGCCTGGAGGCCTGGCGGGCCCGCAGGGCCCGGATCATCCTGGAACTGGACGGTGGGGCCACGATCGGGCGGGTCGCCGAACTGGTGGGGTGCTCACGGACCACGGTGGGCAAGTGGCGGGCCCGTTTCGCCGCCGACCGCATCGATGGGTTGGAGGATGCGCCCCGCTCAGGGCGCCCCAGGGCAGTCTCCGACGAGCAGGTTCAGGCCCTGGTCGACCGGACCTTGCACTCCAAGCCGGCCAACGGGGACCGGGCCTGGTCGACCCGGTCGGCCGCACAGGCCGCCGGGATGAGTCAGTCGACGGTGTCGAGGGTCTGGCGGGCCTTCGGGCTGAAACCGCAGGCGATTGACTCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //