Array 1 174330-173630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIIJ010000003.1 Bifidobacterium sp. DSM 109963 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174329 29 100.0 32 ............................. TTTTCGATTGCCGTATTGACTTCGGCCAGAGC 174268 29 100.0 32 ............................. GACTTGACGTCCATCCGAGCCCGGGTGAACGT 174207 29 100.0 32 ............................. ACCGTTGCCGCCGAGTTTCTCGTAGACCCGGT 174146 29 100.0 32 ............................. TGGACGAGATAGCAATGGAGGACTATCTTGAA 174085 29 96.6 32 .................A........... CACGCCAATATCGGCAGCCTTTTCGACCCGGT 174024 29 100.0 32 ............................. CCGTGCCGTCGGCCTGCACCTCCTCGACGACG 173963 29 100.0 32 ............................. AGGCTGGCGTGAAACCCAACGCGATGGCCATC 173902 29 100.0 32 ............................. TGCTCATGGTCAGCTGGTACTTGTTCTTGATG 173841 29 100.0 32 ............................. TGTGCCGAGCAGGAGAAGAATAGGCAGGGTGG 173780 29 100.0 32 ............................. GTTTCGACGGTATTCCCGTCCTTGACCTGCTC 173719 29 86.2 32 A..T....T...................G GCCGACGAAGAAGCCCGAGCGCAAGCCGAAGC 173658 29 89.7 0 ...........A.T............T.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCCCCGCGCCCGCGGGGATGATCCC # Left flank : GTGGCGGACTCGCGCCTGAGCCTGGCCACGGCCCGCGTCACGCCCGACAGCGACACCCCGGCGCCGTGCTCGTCGCGCAGACGCTCCCAGACCCGGGTCGCGGTATGCCGCTGCTTGCGCCAACTGCCGCGGTCCTCGGCGAGCCACTGCTCGATCAGGGGCAGGTACGGGTCGATCACCGAGCCGCGCCGCCTTCCGACGGGCGGTTTCTCGGACAGGTCGTCCATTCTGAGGTATTTGCGCACCGTGGGTTCGCTCACGCGCTGCTTGCGCGCTATCGACGCTATGGATTCGCCGTTCCCTCTCATACGGCGAATAGACTGTATCTGGGACATGCTGATCATTTGCCTTTCCGGCCCTTTCCACTGGAGATATGAAGCACCATCCAGTTAAGGCCTGTAGGTGGTCGGCATGCTCCCTGCCTAAACCCGAAAAATTTTCGTGACTAAAAACATAACTTCCCATTGAACACAAACATGGATGGAACCGCCATAGTCGAT # Right flank : ACAAGATAACCGAAGTTTAGCCCGGAAAGGCCGTTGTTCTCGAAGTCCCCGATATGGCTAATCGTCCGCCGGCGATCCGTGGCAGGGGCAGGATTCTGCCGACTCGATGAACATGGTCGCGCAGGAGACATCGACCGGCGGGATCATGTGAAATGTCGTTGATAAGACGGCATCGGCTCTCGGTGAGATTATCGGAAATCACTGGAAGCGGATAACCCCAAGCGTGTAGGTTAGGATATCGGGTATGAGCGCATTGATTAATTTCGAGGTTTGTCCCAAGTCCGGCCGGTTCTATGCCGGCAACGCCGGGCGTAAGGTCGGCATCGAATGGCGTGAGTCCGACTGGCTGTTGAAATTCCCCGCTTCCACCGGCAAATTACAAGGCTCCGTCCCTTCGTACACGACTGCCCCGTTGAGTGAGTATCTTGGATCGCATGTGTATGAGATGCTTGGCATCCCGGTTCATGAAACGGTTCTCGGTGTGCGCGACGGCAAGGTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178103-176842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIIJ010000003.1 Bifidobacterium sp. DSM 109963 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 178102 29 100.0 32 ............................. CACCGACCACACAGATAGAGCGCGATGGATTG 178041 29 100.0 32 ............................. TCATGCCTGATGCCACCCGGTATTACACCCGG 177980 29 96.6 32 ............................A CGCGATTAAGACACCACCACTCAACCTCGTTC 177919 29 100.0 32 ............................. GTTCTCGCCTCCAGCACTTATCTCAATCCCAC 177858 29 100.0 32 ............................. CGGCGATGTGACTCCCGACATGTTCGGCGTGC 177797 29 100.0 32 ............................. ATGGATGTGGCCAAGGCGCAGGCGAGGATTAT 177736 29 100.0 32 ............................. ATACCAAGCGATTCCATCCGGCCGTTCCATCT 177675 29 100.0 32 ............................. CTCCACTCTGGGAATTCCGCGCCGACTCGCGA 177614 29 100.0 32 ............................. AAGGACAACGACGGCGACGGTGTGGTGGACGA 177553 29 100.0 32 ............................. GATGGTTATCACGGCGCGAGGTTATGGGAAGA 177492 29 100.0 32 ............................. ATATCAAACTCGTAAACGCGATTAAGACACCA 177431 29 100.0 32 ............................. TGCAAGTTATGGATGAAAATGGTGATTTTGTG 177370 29 100.0 32 ............................. TGGAAGCTGAACACTTTGGCCGTGTCGGGGCC 177309 29 100.0 32 ............................. GCGCCGAGCGTGAGGTGTTCACCGTCGAACGC 177248 29 100.0 32 ............................. ATGTCGAACTCGTACACCTGATTGATGCACCA 177187 29 100.0 32 ............................. CCGCTTGTACTGGGTATCGTTATAGGCTCTCC 177126 29 100.0 32 ............................. CACAGATGCCCCCACGGCGAGTGTGGTTAATG 177065 29 100.0 32 ............................. AGACGCGCCGGACTTGCAAACCGGGTACAACG 177004 29 100.0 44 ............................. TCGGGAAAATGAGTGTTAAGGTAATCGCACATGCGGCGACGACA 176931 29 100.0 32 ............................. TGGCTGGAAATGCCGTTGATTGTGCCGGAAAT 176870 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ============================================ ================== 21 29 99.7 33 GTGCTCCCCGCGCCCGCGGGGATGATCCC # Left flank : AACAAGACCATGTGGGGTTGTGGGATGACCACAAAGGTGAGGTGGCTGCCGGCATTGCTTACGGAATCGACGAGGAAGATGGGGCATGATGATTGTCATTGTGTTGACGGCGTGCCCGGTTGGATTAAGAGGAGATCTAACGCGTTGGCTATTGGAAATATCTCCTGGTGTGTTTGTGGGACGCATAAGTGCACGAGTACGAGAGCGCCTTTGGGAACGCATCACTGATTTATGCAAAAACGGTCGTGCGATTATGGTCTATTCGGCACGTAACGAGCAACATCTGGCCTTTAGAGTTCATCAGTCAGATTGGGTGCCGACGGATTGTGACGGTTTGGAACTGATAAAGAGGCCTGCCGCTGAGGGCGGTTCCGGCAATCGGAATAGGCGACGTGGGTGGAGTAATGCCAGTAAGTATCGTCGCGTCAAGCGGTATGCAAAGTGAATGAAAATGAAAGTCGTGCCCGATGTAAGCCTTGGAAATTGTATACTTTGGAAGT # Right flank : GCGATGTTCTGGATGGATGTATTTAGTCAAGTTGGTGTTTCGTGAATAGTCACGAAGTTTTTTCGGTTTTAGTCAGGGAGCGTTCCGGCCTGTTCCTGTGTTTTCTCCTTGGGTTCGGGCAGGTGTTCCGCGGTGGTTCTGCCGAACATGAGCGCCTCGCTGACGCGGCGGCTTTGCCCGGTGAACTCCAGCAGTCGCCCGTGGTGCACGATTCTGTCGATGATCGCGGCCGCGAGTTTGTCGTCCGCGAAGACCGTGCCCCATTTGCCGAACTCGATGTTCGTGGTGAACACGATGCTCCTCCTTTCGTAGCTACCCGCGATGATCTGGTAGAGCAGGCGCGCCCCGTCGATGTCGAACGGCACGTAGCCGAATTCGTCCAGGATGATCAGGTCGGCCCTGCCGATGTCCCTGAGCATCGGGTCGAGGCTCCCGTCGCGTTTGGCCTTGCCGAGCTGGAGCACGAGCTCGGCGGTCTGGTGGAACCGCACGCTCATGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //