Array 1 347844-347478 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PNRH01000002.1 Streptococcus intermedius strain 32811 32811-contig_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    347843	    36	 100.0	    30	....................................	AAGGCTATCTAGAAGCTGCCGAACACTCGA	
    347777	    36	 100.0	    30	....................................	TGCAACTTTTCAGCAAGCTGTCAAAGGTAA	
    347711	    36	 100.0	    30	....................................	TTGTAAGTTAAAGAGTTAGTTAAAACCTAA	
    347645	    36	 100.0	    30	....................................	ACAAGGGATTACCAGTTTAATCTCTCCACC	
    347579	    36	 100.0	    30	....................................	ATTTGGGAGTTTGCTAGCTCAATGGGAATA	
    347513	    35	  77.8	     0	..................AA-..C.T.G.A.....T	|                             	C [347482]
==========	======	======	======	====================================	==============================	==================
         6	    36	  96.3	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC	                              	       

# Left flank :   ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG
# Right flank :  TATAGAACTCATTATTGGGCATTATTTAATGTAAAATAAATTTAATCAAATAGTTATCTATGCAAGACATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTTGTTGCGACTGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATCCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATGTTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATGCGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATATAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATGAGAACTGCAAAAGAAAAAGTAAAA

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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