Array 1 30605-32733 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZS01000219.1 Xanthomonas fragariae strain PD 5482 isolate PD 5482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30605 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 30665 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 30726 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 30786 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 30846 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 30906 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 30966 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 31026 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 31086 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 31146 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 31206 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 31266 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 31326 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 31386 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 31446 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 31506 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 31566 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 31626 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 31686 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 31746 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 31806 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 31866 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 31926 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 31986 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 32046 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 32106 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 32166 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 32226 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 32286 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 32346 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 32406 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 32466 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 32526 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 32586 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 32646 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 32706 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZS01000237.1 Xanthomonas fragariae strain PD 5482 isolate PD 5482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 94 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 154 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 213 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //