Array 1 4486-4780 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 4486 32 100.0 34 ................................ ATGTGGGATGGATGGCTGTTCCGTGTTGACTTTA 4552 32 100.0 34 ................................ CTTTTTTATCTTCATAATACTTTTCTACTCCTTC 4618 32 100.0 34 ................................ GGAAATATAGACTGGGAGCTTTTAGCACAGACCA 4684 32 100.0 33 ................................ TTTAGTGGAATAGTATAAAACAGGCGGCATCAT 4749 32 87.5 0 .........TA....A...T............ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 97.5 34 GTCGAAGCCCTTGCGGCTTCGTGGATTGAAAT # Left flank : AATTTCATTCATAAGTAAGACAATGATTTGAAGAAAGAATATTGCGAAAGATTTGAATCAATATGAAATTTTTCTTAGATATAGATACTGCAGGAGACATTATAAAAGTCTTAGTTGAAGTAAAGGAAACTATGTATAATTTACGAATTAATGAAGAAAGTTGCTTATCACTTTGAATTTTTTATGCTATACTTTAATTTATAGAAAAGATTGTTATTGTATAAGTATAACCAAATTCGAAGTAATATGTTGATTTGATGTTGGTATGAATAGAGTTTTCAAGGGGTAAGGGCACTGATTCAATTGGGAAAAAGGGAGCGATTTATGTTGGTGCGAATAGGAAGCGCACATGAAAGTCCCGGGAGATTCGCACCAGAAAAAGAGTAGTTATATTGGTGAAGAGATTGAAAATGATTTAAATAAAGATTATATGAGATAGAAAATAAAATAATTATATAAATTAAGTTTGTGTAATGAGAATATTTTTAGTAATATTTGCG # Right flank : TAAGTTCGCCCCTGGAGAAATCCAGGGATTTTTTTGTATAAGCCTTGCGGTATTGTGAGTAGAAAACAAAATTCAAAATATTGTGAAAAAGTCATTGTTTTGTGAAAGAATGCTTATCAAAGGATAATGAGCTATAATTTAAAAGAATATTTTAAGAATGTAAAAGAGTGAAAGTTCAAAATTAACAAAACTATCAGAAAATCAATAATAGAAGAATTATTGATTTTCTGATATATTGAAACAAATGAATGTATTTATATTTGTTTAATGCAGATGAAACAATAAAATATCATAAAAGTAAGCTAACTGAATGATAGAAAGGATTTGAAACACAGGTTAAATATTATGAAATGGGAGATTGTCTGTGTTTTGCCCTTTTTTGTAGTGGTTGAAACATATGCTAATTCGTAATATCAAAAGGACAGAATTAGTAATCAGGCTGCTTACAAGGGACTAAGTGATGGAGATTGTGAAAGCATATGAGTTATGGAGGTGCAGTA # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCCTTGCGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAAGCCCTTGCGGCTTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 284795-285351 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 284795 31 100.0 33 ............................... AATCCCCAGTTTAATTCCATGGTCAACATAGGC 284859 31 100.0 34 ............................... ATGTTATCCGCCAATTTCGTTACTGTTGGCTGCA 284924 31 100.0 35 ............................... CTCCTTAATTACTCAATTATTCCGATGCTATAAAG 284990 31 100.0 38 ............................... ATCATTGGTAAGCTCATATTATCCCTCTTTTGTTGCTG 285059 31 100.0 35 ............................... TGCATGGCATGGTAATCCCCGGAGGCTCCGGACAT 285125 31 100.0 34 ............................... AACTGCACTATCATAATGCCTGATTCTGTCGGTC 285190 31 100.0 35 ............................... CCTTTTCCTGCATGTAAGCACCTAACCAGTGCTTG 285256 31 100.0 34 ............................... ATAAACTTCATGTGATAGATATGTTTCCTCTCCG 285321 31 96.8 0 .............................T. | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 99.6 35 GTCGAAGCCTTGCGGCTTCGTGGATTGAAAT # Left flank : GATATGATTGATTTTATTTTGCAGAACAGTTATTTTTAATTTATTTATCTATGGTAATTATACACTTGCGTGTATGAAATAGGAAGATAATTCTTGGGAAGAGTTGAATGGAATGAGGGGGAAGGGGTTACTGGATAGTGTTGAGAATAAAAATTGAAATTTGAGTAATTTACGAAATGGAGAAGAAAGTTTCTTATCATTTTGAAAAATATGTGATATACTTTTATTTATGGTATGAGGCTTTTGGAAGGTAAGTTTTTTGATGATATGAATGTGGGTATTTGAGAAAATAGTTGGTCAATGGTGATATTTGATAATTGAGTTATTTGGTGCGAATAGGAAGTGTACATGAAAATCCCGGGAGATTCGCACCTGAAAAATGGTGGATTTAATGGTGAAAAGATTGAGAATGATTAAAATGTAGTTATTGTGAGTGGGGATATTATAATATGTGTATAGATTGTTTTGTGAAATGAGATTTTTTTTTGGATGTTTTTGCT # Right flank : TATCTTAATATCCATAGAGTTCACATACTGCTCGAAGCCTTTACCGTGTCAAGTATCAAAAAAAATTTTCAACATCTACATAAAAATAGTAATTATAAACAAAAAATGTATTTCATGATATAATGAGTAGGATAAAATAAACAAAAAACACCACACTTTTGGAGGAACATTATGTTCTTAGCCCATATCAGTGAAGATAAGCTTCGTGAACAAAGTATTCTTGATCATCTGGAGGGGACTGCTGAATTAGCAGGTGAATTTGCCTCTGCATTTGGAACTGAAGCTTGGGGATATGGCTGTGGCATGATGCATGATATCGGCAAATATTCCGATAGTTTTCAGAAGCGTATTCATGGAGGAAAGCTGACGGACCATGCCACTGCAGGTGCCAGGGAATTATATCAAAGACATAATTATGTCTGCGCATATTGTATATCAGGGCATCATACCGGACTTTTAGATGGAGGAAGTGCGGCCGACGTGGGAGGCGAAGCCACATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCTTGCGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAAGCCTTTGCGGCTTCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 293188-295147 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 293188 32 100.0 34 ................................ TTTATCACTGGGGAAAATAAAGAAATGGTTCGCA 293254 32 100.0 33 ................................ CCTTTTTTGATGTACACTGTCTGGATCCATGCA 293319 32 100.0 34 ................................ CCATGTTGGCAAGAGGAACAGAATCCTGGGGTGG 293385 32 100.0 35 ................................ CTCCATTTCCCGCCGTGAAGTTCAAGGCGTTTGCT 293452 32 100.0 34 ................................ ATTTTATATCAGTCACTAATATTTGTCAATAGAT 293518 32 100.0 34 ................................ AGATGGTTGATCACTTTATAAACAGTAGTCGTTT 293584 32 100.0 35 ................................ ATTAAATCTTTGGAGATAAGCAGGTTCCCAGAATT 293651 32 100.0 34 ................................ CCTTGTCCAGCGGTACCTTCTGGGCGCCCAGCTC 293717 32 100.0 35 ................................ CCTTCCGGGGATTTTTCCGTCTGGAACCTCTCGAT 293784 32 100.0 34 ................................ ATGTATCTATCGATTATCTGCTGTGCATGACAGA 293850 32 100.0 33 ................................ CCCCTGCCGGTATGGAGAATGGGAACTCAAACA 293915 32 100.0 35 ................................ TCAGAGGGCGGGAACAGCCCGGAACTGAAAAAAGA 293982 32 100.0 35 ................................ TGCTCTGCAACAGGCGGCAATCCCATAGCGGCACG 294049 32 100.0 34 ................................ CCGTGTTGAAATCAATATCGTTTATATTCATGGC 294115 32 100.0 35 ................................ CTCGGTCACTCTGGCCCATTCGGCAGGGAAGTTTT 294182 32 100.0 35 ................................ TGGGGCTGTCCTGAGGGGCGGGAACCCGTTCCTGG 294249 32 100.0 35 ................................ CATCTATATCTGGACTCGGAAGGGGAGCATGATAT 294316 32 100.0 34 ................................ ATCGGACATGGAAATGATGATTGGTTCCAACGCC 294382 32 100.0 35 ................................ ATTTAAAGCATTCGTCCCTATGGCAGTTGTACGCC 294449 32 100.0 35 ................................ TTAATTTTAATACAGTTAGGTTTACTGTATCATTT 294516 32 100.0 35 ................................ AGGTGGAAGACGTGGAACAAAAGAAGCCGGAAGCC 294583 32 100.0 34 ................................ ACTACCTATGTACTCTACAGGCCTACCCTCTGCC 294649 32 100.0 36 ................................ CACTGCCTGCCTGTTGTGCATAGCGCCTATAAGCGC 294717 32 100.0 33 ................................ CCAGTTGGCTACAGCTCCCAGTTCTTCTTTGGT 294782 32 100.0 35 ................................ TATCTGGTCATAAACCGTTCCAACGGCCAGATTTT 294849 32 100.0 34 ................................ CCTCTGCTGTCGGGCATAAAGAAAATGCCGCAAA 294915 32 100.0 34 ................................ TTTAAATTTATCCAAGTTTTCACACGGATTTTCT 294981 32 100.0 35 ................................ GCTTTATCATAATCCGTATAATGTCCGAGCAACAC 295048 32 100.0 33 ................................ CACAAGAGCAATTGTCTTACTATGCTGTTCCCG 295113 31 90.6 0 .............A...........-G..... | TTT,A [295134,295139] ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.7 34 GTCACCACCTTGCGGGTGGTGTGGATTGAAAT # Left flank : ATGAATATCCACCTTTTTTCTGGAAATAGGAGGCTGTCATGCTGGTATTAATAACTTATGATGTGAATACGGAAACTGCCGCGGGTAAGTCCCGGTTAAGAAAAGTTGCAAAGCAATGTGTGAATTATGGAACAAGAGTACAGAATTCTGTATTTGAGTGTGTTCTGGATCCCGGACAGTGTTTAATGCTGAAAGCTGCATTAACGGAATTGATTGATGAAAATGTGGATAGCCTCAGATTTTATTATTTGGGGAATCAGAATAAGGCACGGGTTGAACATGTTGGAGTGAATAAGGGGATTAATGTGAAAGAGCCTCTGATTTTTTAGTGCGAACCTGAAGCGCACATGAAATCCCCGGGGGATTCGCACCGGAATTTTGATGAGATATTGCTTGGGGTTGCTTTTTGATGTGGAAGAATGTAAGATGTAAAGTGAATTGGGTGTGGATTGTTGGTGAAGATGAATAGGAATTAAGAGTGGTTTTTGTGCAAAATTGCT # Right flank : TATATTATTGCGATTAGGGTATTTATGTAAATCTCATAAGTATATTGCCATAACATTTTTTGTAGGCAATACGATGGGGAATTCATAGAGAAGAGTATGATTTGAGATAGGGAACAGGATAAATATATTATGAATACTTAAGCAAATGACGTTACCAGTCTGTCTTGTTTTGTCACGGATAGAAAATATATTAGAAAGATTACCATTATTAATCATAATTTTCATGGATAAGTTATTATGGCAGGATGTAGATATTATAAAAGGTTTTAGGTGGAAGTAGATGGAGATTTACTGAATGAAGGAGGCTTGATATATAAATATGAATTACATTTTGAAGTAATATTTTTAATGATAAAGTAAAATAAATTCTTACGAATAGGATCTCCATGAATGTATAAATGAACTTTGGGTAATTTGCGGATTAGTGAAGAAAGTTACTTATCATTTTAAATTATTTATGCTATACTTTGATTCATAGAATAAAACTTTACATTACTGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTTGCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACCACCTTGCGGGTGGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 295949-297299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 295949 32 100.0 34 ................................ CAATATCAGAAGTATAATTTTCATAGCGTTGAAT 296015 32 100.0 33 ................................ CTGTAAAGGGGAGTTAAATATAAAATATACATC 296080 32 100.0 34 ................................ TTATATCCATATTATATACGATGTGACAAATATT 296146 32 100.0 33 ................................ ATCGGTGACAGATGAAATGTACCCGGTAAAGGA 296211 32 100.0 36 ................................ AGGAAATCGAGTGCGCTTTGGAATAATCCCTCTTTC 296279 32 100.0 35 ................................ AGAATAGTACTACGCTTACGGAAATAGGTGACTAT 296346 32 100.0 33 ................................ TTCTGTTCCTTATCCCAAGCCAGCCTGAAGGCC 296411 32 100.0 35 ................................ AATCCCTGCATTCTCTAAACACCAATAATCAACGG 296478 32 100.0 34 ................................ ACAGACAGTATCTATTGGAGAGGTATAACATATG 296544 32 100.0 33 ................................ TCCACTTTCCGGCAACTGCTCCGCTACCGAAAT 296609 32 100.0 35 ................................ CGCTGCCGGTGCGGGGTAAAGTCTCTAACGGAGGA 296676 32 100.0 33 ................................ TGCTGCATATGGCTGTACTTGCAGAATGTCTCT 296741 32 100.0 33 ................................ CTATGAAATACCTAAAAAAGAGAAGCAGGAGAA 296806 32 100.0 33 ................................ TACGAAGCTGTGAAAGACCTTCCCGCTGAACAG 296871 32 100.0 36 ................................ ATTGGCAGGATTAGCAGCATTACGAAAAGTCTGCAT 296939 32 100.0 33 ................................ ATACATTTATCTTCCTCCTTAGCACACTTAGAA 297004 32 100.0 33 ................................ TTCCAGGGGAAGTAGGGTATGATATTTTATAAA 297069 32 100.0 34 ................................ CATTGCCTTGTTCTTGGCTTCCTGCTCTTCCTTT 297135 32 100.0 35 ................................ AATGAAAGAAGTCATCCAGCGCTACGGGCTGCCGG 297202 32 100.0 34 ................................ CCCAACTCTGGCCCCTGTGGAAAGAAGGAATTCC 297268 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 100.0 34 GTCGAAGCCTATACGGCTTCGTGGATTGAAAT # Left flank : AGGCTTGATATATAAATATGAATTACATTTTGAAGTAATATTTTTAATGATAAAGTAAAATAAATTCTTACGAATAGGATCTCCATGAATGTATAAATGAACTTTGGGTAATTTGCGGATTAGTGAAGAAAGTTACTTATCATTTTAAATTATTTATGCTATACTTTGATTCATAGAATAAAACTTTACATTACTGTTTTGTTGTTATAGCATAAGGAATAAGAACAATAAATTTTATAGTCATATAATAGTTTATTGTTAGCATGATTAGAGTTTTATTGAGTAAAAGTACTTGTTTAATTATGAAATTTGCGAACAGAGTTATTGTTAGTGCGAATAGGAAGTGCACATGAAATTCCCGAGAGATTCGCACCTGAAAAAGAGTTGTTTTAATGGGGAAGAGATTGAAAATAATTTATATAAAGATATTATGAGGTGGAAAATATAATAAGTATATAATTAAGTTTGTGTTATGAGATTGTTTTTTGGATATTTTTGCT # Right flank : TTGTAAGAAGTCGCACCTTGCATTGATGTAAATTGCATATTATTCATAGTTAAAACTTATCCAATAGTAAGCTGTCGTTTTATGTATCTAAGAAATAAAAGAATACATCCACTAGACAACACATTTTCGCCCTTATGACGTTTGTCAATTATTATCTATAGTAAAACAAAGAACGATTTATAATACCTATACATTCTCTTACAAAATGAGGTGAAAAAATGGGAAAGAATGAAGATTCTTTCTTCCTGAATTACCTGCCAATAAGTATAACTTTGGTATCCCTGGAAAAGGCCGAATTACCTCCATTTTTGGGTTCTGCCCTTCGCGGTGTGATTGGACAGGCATTATTTCAGGATAAGAATGCCTACAATTATCTATATCACAACGGCAAAATGAGCAGTAATATGCAAGATATAATTAATCCGTATGTGCTCATTCCTCCTGATACAAAGAAGAAAATATATTTTGAAAAAGAAGAGCTAAACTTCAAAATACTTCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCTATACGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGAAGCCTATACGGCTTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 308334-309154 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 308334 32 100.0 34 ................................ CATCCGGGTTATGCCCGGCATGTATGTTTATTCT 308400 32 100.0 33 ................................ TGCAATATGGTATTCCCACTATTCCTTGCCCTG 308465 32 100.0 33 ................................ TCTAACCATTGGAGAGAATACATATAAGGAGGA 308530 32 100.0 33 ................................ CTGGCATCCATGCCTTTGATTGCCCCGCTGTCG 308595 32 100.0 35 ................................ GGAATGCCAATCCGTACCCTGGAAAATTGGGACCG 308662 32 100.0 34 ................................ CCCTGTATGAACAAACTACATCCATCAGAATCTC 308728 32 100.0 34 ................................ ATTACAACCTCTGTCATGAATATGACGAAAACAG 308794 32 100.0 34 ................................ ACATCGTCGCTTGCAGATAAAAATGCTTCTCTAT 308860 32 100.0 33 ................................ ATGGTAATACCTCGCTTTCTTTAAAAATAATTA 308925 32 96.9 34 .......................A........ TATCTGGGACAAGCCATGGATATTGTATGGGTTT 308991 32 90.6 34 ...A.......C.C.................. GGTACAGCGAAGAGGGATTTCTGGCACAGGCCCA 309057 32 90.6 34 ...........C........A..........C TGAGAATTGTTGTTTTCCCACATCCAGACTCTCC 309123 32 81.2 0 ...........C......CTT.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 96.9 34 GTCGAGGCTTATGTAGCCTCGTGGATTGAAAT # Left flank : ATCATGCGGATTTATGATATTATGAATGAAGTGATGAAGTGTTCCTTTGAAAAAGTGGTACAGGCGAGAGGAAACCGGGCCGGTTTGTATTATCATGGACGGATTGTGGACGCTTTTGAGAGGAAGGATGATGAAGCGGCTGAAAAAATAATGGATGAGCATATGAAAGAGTTGTATGAGAGCTTTTTTAATGATTTTAGGGATTGAGAATGCTGTATGGACTTATTTTATTAAGTAAACGTTATATTGAGTAAAAAAGAATTAGTGATATTTGTTTTTAGATGATAAAATAAGAGTTGAGTTTATAATTTTAAGAGGGTCATAAGTAAGGTGCGAATGTATAGTGCACATGAAAATACCGGGGGATTCGCACCAAAAAAGTGCTTAAATATTATGGACATAAATGTTTTGAAGGCTTATTATATAAATGTGTGAAGATGTATTTGTGTAAGAGTTATATTTCGGGGTTAAATGGTTATGTTTTTTTGAATGTTTTTGCT # Right flank : TTGCATGACTGGTACAGGCATTATTTATTGTATGTCGAAGCTTATGTAACATCGTGTTGAGTTTGGAGGAATAACGATGCTTATGTTGTCACAATTCTATGAAAAAATTGTAACATCCGAGAAAGCTTCCAATAGAAGATACTGTGGAGGCAATAACAATTGTGTCGAAGCATTTTAAGGTAATTTATAGTATGAAAAAATAATTATTTTGATTTAAACTAAAAAGTGTGCATAAATTATTTGTGTAAATATCTGAGTTATTTAAAGTATTATATGAGCCATGTTATAAAATATGGGAAGATCAAACAATTGTAGGAAGAGTATAGAAAAGGGATGAGTTATGGAACCTTCAAAAAAAGATTGGTTACTATATAGGGAAAAGATAGCAGGTTGGCAGGAAGCTTATATGGAAAAGCTAATAAAAGAATATGTCGATTATCTGAATGGTGACGAACCTGCATCTACAAAATTCTGGAGAATGGAAAAGCGTATCAAACAGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 311926-313012 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHC01000020.1 Eisenbergiella tayi strain NML140904 BEI62_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 311926 32 100.0 34 ................................ CTTGGGCGCAGCAAATTGCGGATAGCATAGCGGC 311992 32 100.0 34 ................................ ACCATGACGGCATTGTCCTGCGCGATTGCATCCA 312058 32 100.0 34 ................................ TATTAATTTAGGGTCTCTGACATCCTCAGAAAAC 312124 32 100.0 33 ................................ TTCAAAGAAAGCCGGAAAGGCCATTGTAAAGGC 312189 32 100.0 34 ................................ CCTGTCAAGTGTTGGCTTCAACCGTAACCCACGG 312255 32 100.0 34 ................................ AACAGGGGAGGCGGTATTTTACTGGCCTGACAAA 312321 32 100.0 35 ................................ CCAATATCTCATTAGAATCATTTCGAACAATAATG 312388 32 100.0 33 ................................ AGATTATCAATAAAATCAACTTTATCCAGATTA 312453 32 100.0 35 ................................ GAAATAGAAAGATGATTAAAATAGTATGCTTGGAT 312520 32 100.0 34 ................................ CCCCGAATGACAGAAGCACCAGGTATCGTTTCAT 312586 32 100.0 34 ................................ AAATGAACAAAATACTATCATACAAGGCGCATCA 312652 32 100.0 35 ................................ ACAGGAACGAATGTTGGGTGGGTGAAACATATGCC 312719 32 100.0 33 ................................ TTCCAAAAGCCTTCCAATACTAGCAATTGTTGT 312784 32 100.0 34 ................................ TCAGCAGTTACCACAGAAAAGGCAAATCCGTATC 312850 32 100.0 34 ................................ TCCAGAGAATGAAAAGGAGCTTTCTACGGAACCC 312916 32 100.0 33 ................................ CTATTCGCAATATTTATAGCATGAGGCTTATCG 312981 32 93.8 0 .............T..............G... | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.6 34 GTCGAGGCTTACGCAGCCTCGTGGATTGAAAT # Left flank : TTAATTAGCGTTATATCTGATAGATATAAACGAATATTTGATTACTTATTACCTTTAAAAACAGAACTAAAAATAAATGTAATTATTTGTTTGATAAATATGGAGATTAATTTTATATGTTTAGGACAAACATACACGATATAGATATTTTTTAGTATACTGGGGATCATTTTCTTGATTTATCTATGTGGCTATTCAGTAATACCAAGTAAAAAGTATTATTTGTATCATTTATTATGTAATATGTGAGTAGAAAATAAAAATCAGTGTTATTTGTTTTATATAGTAAAAGCAAAAACAGTTTACAGTTTTAAGAGAGAGATAAACAAGGTGCGAATGTATAGTGCACATGAAATTACCGGGGGATTCGCACCAAAAAAGTGCTTAAATATTATGGACATAAATGTTTTAAGGGTTTATCATATAAAGGTATGTAGAAATATTTGTGTAAAAGTTATATTTGTAGTCTAAATCTTTATGTTTTTTTGAATGTTTTTGCT # Right flank : TATGGATATCAAATGATATATCGAACTTATATACAATATAATATTAGATGGAAAGACAGATGAAAATATGGATTGAAATATAGAATATATGTTAAGAAAAGAAATGACCATAGCCAAATATATAAGAAGTATATTTCACAATCTGTAGGAAAGAGTACATCAAAAGGCCATGTTGAGCCAGTTCATAAAGCTCTTGCTAAGCGCAGAAGAAGATGTACTATTCCAGATAAAGATGAAAGAGGTTGAAATTTTGGGAGGAAAAGAAGCATCAAGAGGTTTTTTATATCAGGCATTTGCTTCCGTTCTTGAAGCGTTGTGTCAGAAAAATTGGGATAAAATTTATATAGAATTAAAGTCAAATGATGATAAAGTTGATATTGCATTAGAAGAAAATGGCAGAATTATTAAAAGTATTCAAGTGAAATCAACAATTAATACTTTTAGCAAAAGTTCAATACAAACATGGCTAAGTGATCTTATTCGTGACGATGTAGGCTCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTACGCAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //