Array 1 425642-422209 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQD01000001.1 Serratia marcescens strain 1707 NODE_1_length_584610_cov_44.97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 425641 29 100.0 32 ............................. GCCTTTTTACCTTCGGTGAATTTGCTTTTGGC 425580 29 100.0 32 ............................. CGTACTACAACGGCACGTCAAAGGCCGCAGGG 425519 29 100.0 33 ............................. ATGCCAACGGCTTACCGCCTCACAGTATTTCGC 425457 29 100.0 32 ............................. GCTGCATTTTCGCATCCAATTAGTTGTCATAT 425396 29 100.0 32 ............................. GTAACGAATTTCTTTTGCAGCTTCGTCAGGGC 425335 29 100.0 32 ............................. GCATTTGGCGTTCGATATAGGTGTACGGTGTC 425274 29 100.0 32 ............................. GAACAACAGGGATCCACTAATGCCGCTGCCGT 425213 29 100.0 32 ............................. CGTCACCGAGTTACTCAGGTTGTCGTAGCCCT 425152 29 100.0 32 ............................. TAGCCGTCGCAACAAGCAACGCCGCCAAAAAT 425091 29 100.0 32 ............................. GATGTTCGATATTACCTGAATGGCATGTTCTT 425030 29 100.0 32 ............................. ATGGCCGACAGCAATATGCCGGTTGAAAACCA 424969 29 100.0 32 ............................. CTTACGTGGTCACGGCGAGCCGTTCGACCGTC 424908 29 100.0 32 ............................. TTTGTAGATAGATGCGATCGGCACTTCGGGCT 424847 29 100.0 32 ............................. CTGCTCCCCTGCAGTTCGCGCATTGCCTGAGA 424786 29 100.0 32 ............................. CTGCGCGGCGGGATGTTGTGGGAGGGGTCGCC 424725 29 100.0 32 ............................. CTGGTGGGGCTGGTAAGTCTGCTCGACGGCAT 424664 29 100.0 32 ............................. TCTGCCGGGCTGCCGCCGCTCAACGTCGAGGA 424603 29 100.0 32 ............................. AATATTAATAATGCCGGGTATGTCCAGCGGGC 424542 29 100.0 33 ............................. GATGGCGCCTACAATTGGGCAGGCAGCGCCAGC 424480 29 100.0 32 ............................. CGCACAACGGTGCGTTTTTCATAGCTGGCGTT 424419 29 100.0 32 ............................. TATCAATATACACTTGACGTCCTTGGGAGGTG 424358 29 100.0 33 ............................. CCGATCGCGCCGGCAACGATCTGGCCACACAGC 424296 29 100.0 32 ............................. CCATTCGATAACGCGAGTTAATTCGATTGAGT 424235 29 100.0 32 ............................. GTAGCTGAATGGCTATCCGAACAGGGATATTC 424174 29 100.0 32 ............................. GTAGCTGAATGGCTATCCGAACAGGGATATTC 424113 29 100.0 33 ............................. ATATATTTATGGAGCCTCGACAATGACACTTTC 424051 29 100.0 32 ............................. CTGGTGATCGAGCCAGCAAGATCATCGTCTGC 423990 29 100.0 32 ............................. CTCAAACCCCAAATCTCTGGCCATGGTCATGC 423929 29 100.0 32 ............................. TTGGCATTCGAACGCAGTTTGGGTTCTATGGG 423868 29 100.0 32 ............................. CGCGCGCCCAGTCCCAGCGCCTCGTTAGCGGT 423807 29 100.0 33 ............................. TGCCGTTTGCAGCGCTAATGTGAAGCTTACAGC 423745 29 100.0 33 ............................. TACAACGCATTGGTGACACGGCACACCATCAGC 423683 29 100.0 32 ............................. CCCTCGCCGAGAATATCGACGCTAACCAGCTG 423622 29 100.0 32 ............................. ATGTTCGCATTGAGGTGTTCGACGGCCAGAAT 423561 29 100.0 32 ............................. AAATGCGCGCCCGCACCGCAGCTGCTTACCGC 423500 29 100.0 32 ............................. CCTGCGCGTAGTGGATAAGGCGGCGCGCCGTG 423439 29 100.0 32 ............................. GTTGGTAATAACGGCATTTATAGCGTTATTCT 423378 29 100.0 32 ............................. TCGTTATCCGGATCGCCCATGTTGCACTTGAC 423317 29 100.0 32 ............................. TTGATGGATGTTGCATCGGGCGCTTTGGAGGA 423256 29 100.0 32 ............................. GCACGATTATCGCGCTATTACGGGCTGTTACA 423195 29 100.0 32 ............................. GAATTCGCGAGGGGATTCTCTATAGCTTCGGC 423134 29 100.0 33 ............................. ACTAATCCCCAGGTCAGCGGCGACAGGGCCGGC 423072 29 100.0 32 ............................. CTGGCGTTTCACATGACAGGCCGCGTGATGGT 423011 29 100.0 32 ............................. GAGGAAGAAGACGACGAAGCAGCCTTTACCGC 422950 29 100.0 32 ............................. GCCGCCAATTCTTTTTGCGTCAGGCCGAGTTG 422889 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 422828 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 422767 29 100.0 32 ............................. AGGTGTTCGGGCCGACAGACAACTGGCAGCGC 422706 29 100.0 32 ............................. CGATTATGAGACCCTTGATAGGGCTATATAAA 422645 29 100.0 32 ............................. GTGTCACGCTGTACAACCCGCGCACCATCGAA 422584 29 79.3 12 .................ACC.T.G....C CATACGCGGCAA A [422563] Deletion [422544] 422542 29 100.0 32 ............................. TCCACGGCCAGGCGCTGGGTGTGCAGGCTGTT 422481 29 100.0 32 ............................. CTGGCACGTTCAGAACGGAACCCCGTTGATGG 422420 29 100.0 32 ............................. CCCATGGTCACGAACTCGGCCGCGATGCCATT 422359 29 100.0 32 ............................. TAGATCGCATTGCATCCGGCGTTATGACAATA 422298 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 422237 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGTGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATTGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : TTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 432129-429046 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQD01000001.1 Serratia marcescens strain 1707 NODE_1_length_584610_cov_44.97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432128 29 100.0 32 ............................. GCGTTCGACTTCAGTGATTTCGATGCTCAAAA 432067 29 100.0 32 ............................. CGCATGCCCTCCTTTTCCTGCAGGAATTGGTC 432006 29 100.0 32 ............................. CAGATGCCCGATTTGCGGCACGGTTCCGAACG 431945 29 100.0 32 ............................. CCGATTTAACGTCCATTTCGGCGGTCGCTCGT 431884 29 100.0 32 ............................. AACATCTCCGACACGTCCGAAGGGAAACCGGG 431823 29 100.0 32 ............................. ACTGTCCTTTGTCGACAGCGAACCTAACCCGA 431762 29 100.0 32 ............................. CAGCGTTAAATCGCCTTTCGGCGTGTTGTCGG 431701 29 100.0 32 ............................. AAATGGAACGCCTGCAGGCACCGCTGCGCATA 431640 29 100.0 32 ............................. TTCGCCGCGCGCTGTGGGCAGCGTTGGAAAAG 431579 29 100.0 32 ............................. TAAATTTAACGTCCATTTCGGCGGCCGTTCGT 431518 29 100.0 32 ............................. GCCCGACATAATTAAGCCGATAATCACGCCCC 431457 29 100.0 32 ............................. CACTGCGTTTACATCGATGAAGTCGACGCCAT 431396 29 100.0 32 ............................. GCATTGAGCTGGTATTAGAAAGTAATGGCTCT 431335 29 100.0 32 ............................. CGCTATATCGCCTTGGGTTCCTGAAATTGTGG 431274 29 100.0 32 ............................. GGAGTTGGCAATCTGCTGAATCTGAACGATGT 431213 29 100.0 33 ............................. CGAATCATGTATCGGATTACCTATCTATGTGAA 431151 29 100.0 32 ............................. CGAGCCGAGCAGTATCACCCGGTTATTCCGAT 431090 29 100.0 32 ............................. GACTTTCTTACCTGTTATCGGGATGAAGTCGT 431029 29 100.0 32 ............................. GGTTGCTACGCAGCAAGACCTTCTGGGGGGCA 430968 29 100.0 32 ............................. CCATCGAGGTGCCGCGCGACCCGCAGCAGGCC 430907 29 100.0 32 ............................. TAGACATTCCCCGGCTCCTTAGCGGTTAACGT 430846 29 100.0 32 ............................. CTGCTCGAGTTCTCAGTGGGCCGCAGCATGAC 430785 29 100.0 32 ............................. TTTAGGACTGACGGCCGATCGCCGTTTGTTTA 430724 29 100.0 32 ............................. CATTTAACGAGGTATGACCAATGGCAGTTTTT 430663 29 100.0 32 ............................. CAGGCAGGCAAAGAATTGGGCACGGTGATCGA 430602 29 100.0 32 ............................. GTGCGGAAATTTATCGAGCTGCTGCCGCCCGA 430541 29 100.0 33 ............................. GAACTGCGCATTTCCGGCATGATCCCGTTTAGC 430479 29 100.0 32 ............................. CCGGCTATGAGCTGTGCAAGCTGATTTACCTT 430418 29 100.0 32 ............................. GTGTTGAACGTGTCGAAGTTGCTCAACCGGCC 430357 29 100.0 32 ............................. TTAAGGGGCGATCTCGCCGCCGCGCACCGGCT 430296 29 100.0 32 ............................. ATCAACCCGCTATTTGCACAATTGCACAAGGC 430235 29 100.0 32 ............................. GCTTCCTCGATGTTGCCGGCGTCGATATTCCA 430174 29 100.0 32 ............................. CTTTTGCGCATTACCTGAAACGACAATCACCG 430113 29 100.0 32 ............................. TCGTTAATGTCGTCCACGATTTCTTCGGTGAT 430052 29 100.0 33 ............................. CAATACGCCTCGTTCATGATGTACGCCCCGGTC 429990 29 100.0 32 ............................. ATCGTAGAAAACCCACGCCGGATTATTTGTCC 429929 29 100.0 32 ............................. CTCGCCATTGTCTCCGTGGAGAAAACCTCATC 429868 29 100.0 32 ............................. GCGGATACGTACTCTTGCGAGTAGAGGGGGGA 429807 29 100.0 32 ............................. CAATGTCGCGCAGGAAACTGTTAACAACCTGA 429746 29 100.0 32 ............................. GATAAGGCAGGTAATATCATTGCCGGTGCTAC 429685 29 100.0 32 ............................. GAAGTATATGAAGGCGTCGTCAGGCTGACGAA 429624 29 100.0 32 ............................. GACTCGTTGGGCCGCTATATCCTCGCCAATCC 429563 29 100.0 32 ............................. TCAGTGAGCAGAATGCGGCCGCGACACTTGCT 429502 29 100.0 32 ............................. ATCGTCAATTCCAACGGCACGCAGGTGATCGA 429441 29 100.0 32 ............................. TAGACATTCCCCGGCTCCTTAGCGGTTAACGT 429380 29 100.0 32 ............................. TGTTCCCGGGTGGTTCCGTCCCTGACTTGCGC 429319 29 100.0 32 ............................. GCGTTTGCCGGCTTCAGCGACTGCTGCAAGGA 429258 29 100.0 32 ............................. CCCCAGGCGCGCCGTGAAGTTCTGGTAACTGT 429197 29 100.0 32 ............................. CGCTCAGACGTTTCTGGAGTGTCTCGTGGCGT 429136 29 96.6 32 ............C................ CAATTATGCCTTGTACGGCGACATGTCGGCAC 429075 29 82.8 0 ............C............CGAT | C [429050] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCGGAACCTGTTTCGTTAGGTGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGCTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTACGAGGCCGGTTGGCCGTGTGGCTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAGCCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCCATTGAAAATCAGTAAGTTATCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATTAGTTAATCTTAGA # Right flank : TTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCACCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGCGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 442122-441727 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQD01000001.1 Serratia marcescens strain 1707 NODE_1_length_584610_cov_44.97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442121 29 100.0 32 ............................. TGTGTCTTTCAACCACCGGCCAATGCAGCGCA 442060 29 100.0 32 ............................. CTCACACCCACAGTACGCGCACCGGCCGCCGA 441999 29 100.0 32 ............................. GTGAGATAAAAACGCCGGTAGTTAACGCGGTC 441938 29 100.0 32 ............................. TGAACATGATTTCTTCTCCTGGGTCTTCGGGT 441877 29 96.6 32 ............................A CCCGCCGGGCATCGCTTTGTCTGAAATAAGGA 441816 29 100.0 32 ............................. CGCCTGCATCCGCCGCCACAACTGAGTTTTTG 441755 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGTGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGACGGGCGTAGGGGGGAGTATCTTGTTGTTATAGCGTGAAAATTCGGTGATTCAGCTTTATTGCTATAGATGGTTTTTTTATTTATTAGATTTCAAAGAGTTATGTGACTGCCCCGATGCTTAAATCGCGGTGAAATCTCGTAGATGTTGAAATCCATTTAATTCAATTAGATATATTTATA # Right flank : GGCGCGACAACGAAGCCTACCGCGGTATTAGCGTGTTCCTTACGCAAGTGTGGGGAAGTAAACGCATCAAGAGATATAATAATTCAAATGAAATAATACCATGCTAATTATATTAAGTGGTATAAGGAGTTTTTGTCTTATTTAAGAAGCTATATGAAATTTAAATTAATATCATTGCGCTTTGATTTTACTGTTGTGAGCTTAATTGGCTTTTTGTGTTTTCGAATAAAATATAAGTACCTTTAGCCTGATGGAAGTGCTAAAGATAACAAGGCATTATTTATATCTAAACGGGATTGTTTATGGGAAGTGATATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTTTTCATGCCGCCGATATTCTGGCAGAGATAGGTTTCTCTCGTGCCGATGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //