Array 1 20716-21657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000007.1 Nostoc sp. FACHB-87 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 20716 37 100.0 34 ..................................... AAAGACTATATTTCGACCTTCTGGAAATTTGCCT 20787 37 100.0 37 ..................................... CAAACACTAAATCTAGATGAGCATTTACCCACACATC 20861 37 100.0 38 ..................................... AGAAAATACAGTAAATAAGGTTAACTACATTAAACCCG 20936 37 100.0 38 ..................................... GATTTAGTAAGTTTATCTAATTCAAGATTACAACTAAT 21011 37 100.0 35 ..................................... ATTAGGAGTAAATAAATAAAGTTCTTTATCATGTT 21083 37 100.0 44 ..................................... CATAGTCGTATCTTGTGATATAGTGACAAACATAGTTTACAGCA 21164 37 100.0 36 ..................................... AGCTTTGATAATGCTTGGCAGTGGTTAGGGTATAGC 21237 37 100.0 43 ..................................... CTTTGTATCTATCCTAGCTCTATATCCAATTCCGTTATCCGGT 21317 37 100.0 36 ..................................... ATAATTACAGCCTACTGAGTGTTATACTTGGTAGGC 21390 37 100.0 44 ..................................... ATGCTTTTTCTCCAATAAAAAAGGAGGTGAGTATACCTCCTGAA 21471 37 100.0 39 ..................................... CTTTAAATTAGATGGTTGTTTGCCCCATTCATAGCGAAC 21547 37 100.0 37 ..................................... CTCGCCTTCAACAACTTATCCACAGGCGCGATCGCAA 21621 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 13 37 100.0 38 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AATACATAATCCTCTATCTTAAGAGAAGTTGAGGCGATCGCTTTTGCTGAGTCTTTGTTATTGCAAGCAGCCAACCACCGCCGCCGCGAAAGTTAACTCAGCAGCAATTGTAGGAACTGGCTTGATTTTTGAAATTATCTTTAAAGGCTGGGAGTAGGAAAGAGGATTTTTTTGGTGTACTGTATTTTTTATGCAAATCCAATGTTGTTCCTAATAGATACCCGACTTTTTGAAAAAGTCGGGTATCTGAGCAGCACGACAAAATTAGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTGAATCAGAATGGCTGGATTCCTTGGAGAGTAAGGTTTTGCAGAAAAATTTAATTAAAATCGTCCGCGCACCTTACGCAGTATGAGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATATAGTAAGCTTTTCCGGCTCCCGCG # Right flank : CATTATCGCTCATGGAAATTTTCAAGAGTTAGTAAATGATTGCAATTTAAACGATGAATTGTCTCACACAGAGGCACAGACGCGACAAGGCGTTTTATGTTTGAGTCCATGAAATTTCATCTCTTGATTCAGCAATACCAAGTCTTTATTAGTCAGACGATGGAGTTAATTATTCAAGGTGTTGGCAAAAATTAAAACGGGATAGGCGAACCTATCCCGTCAACATATACTAGCGTTTAAACTTTAACGCTGAGTTTAAGTTCCACTAGTCCAAGAGTTGATGTACTCAATTTGATCTGGTGTCAAGCTATCGATATAAATGCCAATAGCTTCCAACTTCAACCGCGCAATTTCTTGATCTACCTCAGTAGGAATCGAGTGTAAACCAGGTTCCAATTTACCTTGATTCTTCACCAAGTATTCACACGCCAAGGCTTGGTTTGCAAAACTCATATCCATTACCGCGCTAGGATGTCCTTCGGCTGCGGCGAGGTTGACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 12411-10964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000082.1 Nostoc sp. FACHB-87 contig82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 12410 37 100.0 36 ..................................... TATATTATATGTTCATTGTAGCATTGTTTCTGTCGG 12337 37 100.0 36 ..................................... ATTTAGAAGACCAACTTCTAAAATCTCTAACTTATT 12264 37 100.0 34 ..................................... ACTGAAATCATGCTTTCACTATCCGAACTAAAAA 12193 37 100.0 37 ..................................... AATTCCACAGGAGATCCGTTCATCAACACGGTATAAT 12119 37 97.3 36 ............................A........ TTTATTTCACCAAGTGTATCTGGTCTGTGGCAGACA 12046 37 100.0 38 ..................................... TCTACTATTGGTGTCAAATCTAGAACTTGATTCTTCAA 11971 37 100.0 39 ..................................... TTAAATGGATTTCCTCTAGCAGTTCCAACAAAGAAGGAA 11895 37 100.0 40 ..................................... AAACTATATTCTTTAATGACTCAAAATTATGTAGTTTTTG 11818 37 100.0 36 ..................................... TGCCAACCGTCCCTTAATAAACTTCTCTTCTACAGT 11745 37 100.0 40 ..................................... CTCCCCAACCCACAGAAGAACAAGCATGGGAAGCTGCCGA 11668 37 100.0 37 ..................................... ATATAATCACATTAGCCCAAACAGGTGTATTACTCAG 11594 37 100.0 40 ..................................... CTGGTTGTCTTGTCACCCGCTCCCGCGCCAACCATCAAAA 11517 37 100.0 36 ..................................... CAGATATTTGGCAATCAGGTCAGCGTATGGCTGATT 11444 37 100.0 37 ..................................... GCAACTACAGAACATTGTTCAGCACAATTAGCTTTAT 11370 37 100.0 35 ..................................... GATGGTAAAGATTCCGCTAAAAAATCGAGGGCAGA 11298 37 100.0 42 ..................................... ATTCAATTGGATCGGGATTAAACACGATTGGAACTGCTGGTG 11219 37 100.0 36 ..................................... GCGCAGCCCAAAGCCAACGACAAGCGATCGCGCAAG 11146 37 100.0 38 ..................................... AAAAGTCTTGTCTACCAAATAAAACAGATTACTGGCAA 11071 37 100.0 34 ..................................... CTTGAGCGTGATGCCAGAACCGGAGTAGAAGAAG 11000 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 99.9 37 GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Left flank : CTAATTATTTATGATCTGCCAGATAACAAAGCAGCTAACAAACGTCGCACTCGTTTACACAAATTGTTGTCTGGCTATGGTAAATGGACTCAATACAGTGTATTCGAGTGCTTCTTAACAAACGTTCAATTTGCTACACTACAGACCAAAATAGAAAAATTAGTCAAGCCAGAAGAAGATGCTGTACGAATATACGTGCTTGATGCAGGTGCAGTGAGAAGAACCATCACGTATGGTTCGGAAATTCCTCGACAAGAGCAAACAATCGTCTTATGATAGATGAAGGTATCGACTTGATGATTGTCGAGTCAAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAAAATAATAGTTATAGCGTTTCATAAAATGGGAAAGCTGCAAATAATTTGCAATAAGAGAGGCTGAAAATGACCAAAATTTTCGACTCGTCAAATCGCTTCCCAGGAGGCTTGCCCTGTAATAGTTTCAGAACCGGGCG # Right flank : CACTCACGATGCTCTCTCCACTTCTATTGGTTGACGGGTTTCCAAACCTGATTACCCCTGCTAAACTCAGCGATCACTTAATTCACCTTCCTCCATCGCCCGTCCCAAACTTTTCCCAAAGGGGGATGAAATCACCTAAAATATTCAACATTCTTTGACTCCCATCAAACGATGCCCAGAGCAGCCACAGCCCCCAAGCGCAAGCCTAGAGCCAAACCAACCCCAAAGAACTCACTTCCAACATGGGCAGATGACACTGAATTAGTGGGGTTAGTGTTTGATTTGGAGGCAACAGCAACGGCTTCTCTTTACTCGCAGTACACGATAGGACTCCACGCTTGGTTTCTCGACCAAGTGCGACAAGTTCACCCCGATTTATCTGCCTACCTCCACGATGGCGAATCAGAAAAAGCCTTCAGTATCTCAGCACTGGAAGGTCAACTGTTCCCTAGCGGCAAGCAACTGAAACTAGTCGCTAACCAAATCTATCACTGGCATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 24874-24179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000082.1 Nostoc sp. FACHB-87 contig82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24873 37 100.0 35 ..................................... TTGTGATCGCATCTCTAACAACTCCATCACATAAC 24801 37 100.0 35 ..................................... TCCAAGCTCCTCATCTTTCCCTTTAGGGTCGATTA 24729 37 100.0 36 ..................................... ATGAGTTGTTCTATGCGATCGCTGAACCTCAGTACA 24656 37 100.0 36 ..................................... TCGTCCCGGACGATTGCTATATAATCCTCATCAAGA 24583 37 100.0 38 ..................................... ACGCCATACGCTCTTGCGGCAACCTGTAGCGCCGATGG 24508 37 100.0 35 ..................................... AACACGGTTTTTCAAGGTAACAAGACTTGGTGTGA 24436 37 100.0 37 ..................................... ACCCTTTGTCCGGGGGTTGGGTATTCCTCGTATCTGG 24362 37 97.3 37 ..............C...................... TTACGCTGTAAAGAAACTAAGATTTTAGGCTTATTTG 24288 37 97.3 36 ..............C...................... TCAGAGAGACTGATATTAATGACTTAGAAAAATTAA 24215 37 81.1 0 .........GA.C........TA.C....G....... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 97.6 36 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : TGGTCACAACTTAAATCTTTTTTACGCAATTTTGCTCCAACTACAACAGAAATGGTTGATAAACTAATCTCAGTTGCACTCGACTTAATAAATCCTCAACATTTAAGAAACTGGTTTGCTAGTTGCTGCTACTGTACCTCATAACAGCCGTAGGTGCTGTATAGATAGTCATCTTATGATTGGGTAATCAGCTTGATGATTGTCGAGTCAAAGCGAGGTAAAAAACCCTGGGGACTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAACAATTAGGGAAGTTGAGAATTAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGC # Right flank : AAATATAGAAAAGTGTTAATCTTCATTTAGAGTACTGAAGGATGGAAACAGCGTTCTACTTTTATTCAATAGAATAGTTTTCATAAGCTTTTTTATGAGCATTTTTAATTTGTTTAGCTATCCAAGGTGGATCTAAAACAGTAGCACTAGCACCATATTGTAATATTCGTTGGTGAAACCAGAATATATAGTCTTCTTGAGTCAGAATATCAACGTAGGCTGTGTTTTCTGGGGATGAGATAATTTTTTCATGAGGTCGGCGAGGTTTATAGGTAGCTAAAGCACCTGTTAGCCGATAGGTGACATCTATAGTAGGAAATTTAGTGTAAGTCCAAGGTGTATAAGAGGCTGCACCAACTCGGACAAGGCGATCTATTCTAAAAGCACAATTCTGTTCAACATTGGGTTTAGTGGAAATATTCCAGCTATGCCAATCGGGAACTAAGCCAAATAAATATAATGAACCATTGTGTAATCTTAGTTCTGATTTGTCTAAATCC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : GTTTCCAAACCCAACTACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 98776-100043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000009.1 Nostoc sp. FACHB-87 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 98776 37 100.0 37 ..................................... TTCCATAGCTACTTGTACCTTAATCGGTTCGGTTCCT 98850 37 100.0 39 ..................................... GCAATGTCCTCAGCGACGCTTGCAACTGTTTTCCTTGCT 98926 37 100.0 34 ..................................... TGCAACTGCATTAATGCCATCCAAGCATCAGACA 98997 37 100.0 38 ..................................... TAAAGCCGCAAATGAAGCACTAGGTAAAATAGGCGACT 99072 37 100.0 36 ..................................... AATCTACCTTGACCCCTTAACAGGTGAAATTACTGA 99145 37 100.0 33 ..................................... TAAAGCTTTAACAAGTGCTGGTAATGCAGCCAC 99215 37 97.3 34 .................................A... TGGTAATGCAGCCACAACAGCCACTACAGCCCTA 99286 37 100.0 35 ..................................... CCGCGATTGAGCGAGTAGGCGTATTCAGCGACAAG 99358 37 100.0 35 ..................................... AGAGATACGGGTGAGATACTAAAACTTGGATTGCT 99430 37 100.0 34 ..................................... ATCCCAGGTAAAGACGGGAAGAATGGTAGAGATG 99501 37 100.0 36 ..................................... CCGACAAGAAAACCACTAAAGAAAAAGAAAAACCCA 99574 37 100.0 36 ..................................... CTCGTTGTACTTCTTTTTTGAAGGCTTCATGTTTTA 99647 37 100.0 32 ..................................... TGGAAATATGTAAACTGGAAGCCTACTCAGAC 99716 37 100.0 36 ..................................... TACAAGAGCATCTATTGTAGTGAGCTTCCATTCACC 99789 37 100.0 34 ..................................... CTAAGTCCGTGGCATTTTAACTTAAAAAAATTCG 99860 37 100.0 38 ..................................... TTCACCAGTCAGTTTGAGGATGCTGGTAGTGAATTCAT 99935 37 100.0 35 ..................................... TAAGTATTGGTATTATCGGTACTGCTGGATGGATG 100007 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.8 35 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTACTTTTTGGTAAATGGCGTATTAACAGCGAGTGGGAAAAAATTTCGATTGAGTTTAAAGATGATATGACTTATACCCAAACCAAAACACAGACATATATTTTAGCTAAACCTAAAGAATTATTCACTGGTGATAAATTTACTGGTGTATGGTATGTCAATTATGGCAGATTATTTTTAATTGTTAAAGCTGCGCCCCAATCTATGTTTAACTTCAGTTTACCAATATTACATAAAATTAATTTGGCAGATATATTAATCACTTTCATCTCTTTGTTTACGGCAGAAAAGTATGAAATAGTTAAAATTAATCAGACTGAATTGATTATGAAAGATGAAAAGGAATTAATTATTGGGAAGAAAATAATTAGGAATGCAAATTTTTAGAGTTATACTTCATTTAATGTAAAGTTTCACGTATATTGATCCCCCTAAATCCCCCTTAGAAATGGGGATTTTGAAGCATTTTCCCTTGTAAATGTAAGTCCAACTCTAAACTC # Right flank : CGGCGGAAGCCGGAAAGCTAGTGTTTATTTGGTTTTCAAGGTTCAGTTTCGCGGATGGGTTGATTATAACAGTATCAAAAGTCAGTTGATTTGAGGAAAATGGCTGAAACCGTTGCTGTACAAAGTGCGCGGGTGATTTTAATTGAATTTTTCGGCAAAAGCTTGTGCTGAAAGGGAGACAGCTATTTTTCCTCAAGGCGAATTTTTTACACCTACCCATCCGCGAATTAGGCAAAGAAAATGCTTTCGTCGCGGGGTTGTTCGCCACCGATGCGTTCGATTTTATCAAAACAGCAGGCGCAGAGAAAGTAAAAGCGAATGCTGTCGGTATCTGGTTTAATGAGTTTGTGCAAACGCGATCGCAATTTGGCATATTGAGTCTCAGTCAACTGGCACTCAAACACACTGTACTGCACCCACTGTCCATAAGATTTTAAAATTTTATGGATTTTCGTCCGGCGTTTGTCTTCTGGGACATCGTAGGATACAATGACTTTCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 10040-9378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000091.1 Nostoc sp. FACHB-87 contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 10039 37 94.6 35 .........C..........A................ TTTCCACCAGCAACCATACCGACCGGCACACTAAC 9967 37 94.6 37 .........C..........A................ CAATTAGCGCGACCAAAGCGGCTAACTCTTGCCACTG 9893 37 94.6 38 .........C..........T................ TATGGTGTTAATGGTTGCCAAGGACGAGATTGTGGATC 9818 37 97.3 36 .........C........................... TGTCAGCCCCTGCGCTTTGTTCTTAGCTTTACTATT 9745 37 100.0 39 ..................................... CACACCAATCAAGAATACGATTTATACGAACTCGAAAAA 9669 37 100.0 69 ..................................... GCCGGAAACATTAGGCGTAGCGCGGGTATGAAACAAGTTTCTAACTGGCGTAGCGCGGGTATGAAACAA 9563 37 97.3 35 .........................A........... AAATTAAGCGAAATTCAGACAAAAGCCTATTTTTC 9491 37 97.3 40 ...........................A......... AACTAAGACACAAGATTCGTGAACTACTTCCATTAAGACG 9414 37 89.2 0 .........C...........A..A.......A.... | ========== ====== ====== ====== ===================================== ===================================================================== ================== 9 37 96.1 41 GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Left flank : AACGCAATGACAGGCTTCCAGAGCGATCGCAAAACCGAAAGCTAGACGACAAAACCAAACTTTGGCTAGGATTTCAAGACTTGTGTGTACACCGTAGCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTGGCTACCAACAACAGGGCTTTTAAAACATCCTCTCCTACACCCTTACCCCAATCCTTGATTTTTTCTCCCTCTGCGTAACTCATCCGCATCGTCAACTAAGTAGATACCATGAGTACTAGACAAACCTGACTGGTCACTGTATCATGTTTGTATTAACTTGATGGTTGACAAATCAAAGCGGGGGCTAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTTGACAACAAAATAATTACAGCGTTTCATATATCTGGTAAGTTGAGAATTAGTCGCAATTATGACGGCTGAAATTGACATCTTTTTGAGATTCGTCAAATTGCTTCCCAAAAACCTTGCTCCGTATCGGTTTCAGTACGGCGGG # Right flank : AAAAGTGCGATCGCAAAATCTATCGGTTTTATATAAGACTAATATCTGCACCTACACAAATACATTCAGCAATCAAACCGGATTTATATAGTTCATACTGAGAAATGAATAAATAGAAGTTCTTTGTTTGCTAGTTACAGATGATGAAGAAACTGCGGTTCGCTGTTTTAGCCATTAATATTATTATCTGCCTGAGTATATTTTTTGGACTAATAAGTAAAGTCTCTGCTCAACAACCGCAGATTTTACACCCTTTAACGCCGTTAACAGAAACAGAAATTACCACAGCCGTTGAGGTAGTTAAAAAAGCAAAATCGTTAAGCGACACGGCTATTTTTTCGATTGTGGCTTTAAAAGAACCAGATAAACAGGAAGTTTTAAATTTCACACCCAATCAAGAAGTTCAACGGCAAGCTTTTTTAGTAGTATACGAACGTTTACAAAACAAAACCTACGAAGGTATTGTTGACGTAAAACAGCAATCCCTTAATTCTTGGCAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Alternate repeat : GTTTCTAACCACTAATTCCCATCACGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 47146-46677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000014.1 Nostoc sp. FACHB-87 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 47145 36 100.0 37 .................................... TCGTGGTCTACTATGATCACTAACATGCGATCGCAGT 47072 36 100.0 35 .................................... AAAGTATCTAAATCAAGTATTTGCCTATTAGAGGA 47001 36 100.0 37 .................................... CAGCATGGTGTGGCTGATAAGGGCGATACTCTAGGTA 46928 36 100.0 38 .................................... TTGAAAGTCTGAGATTCTACGTTAATTTGAATGTTTAA 46854 36 100.0 34 .................................... TTTTAGAAGGTGTTAATAGCGAGCTAAAATCTGG 46784 36 100.0 36 .................................... CAGATCCACGAAATTTTTAAGGTGACAATGGACAAG 46712 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 99.6 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : AGCTTACAACTTACTTCAAGGATATGGCGAAAGGATGCAATATTCTATTTTCCGTTCTTGGTTGACCATGCGATCGCGTGAAAAATTACGTTGGGAACTGGAAAAAATTCTCGCCCCAGAAGACAGTCTATTATTAATTCGGCTGTCCAATCAGTGCGTTAATTCTATTCCGGCTTACAATCGTCCCGGCGCTTGGACAACTCAAGAAGAACCTTACCGGATTGTCTAAAAACATGGATCTGAGTTTGTGGAACATGAAATAGAACTCAAGCAGGATAAAAACCTTACTGGGCTTGCTTTTGAGCTTTTTTAGGTGAACAGGAGGTGCTTGCATTTTTTTGCGTGAGGTCAAAACCTAGTCCTGGTAAGCGTTCTAAGTTGAGACGGAAACTTGAAAGTTTAACTTTTGGTAAGCAATTGACTTCTTTTGTTGCTTTTTTACTTAGATGCTTGCAAAATAGCAACTGAGTGGTCTGATGACATGGGTTTGAGCGATCGCT # Right flank : GACAATAACTATCAACTGTCAACGAAACTTTTTGTAATTAGTCTTGTCTATAAAACTAATTGATTAGTTTATCAGGAATATATATGCGATCGCCTATCGTAATCGGTACAGGATTACTTGTATCTATAATTTTAAATACCCAAGTATTTGCAAAATCTACAGTCAATTTACCACAAATCACTGCCCAGAATTCTCAGCAACAAATATTAAATCAAAATAATCAAAAGACAAACTCAGGGCTGATTACTCTGCAAAGAACAGCCTGCTATGGTACTTGTCCCATTTATAAAATTACCATCTTTCCTGATGGGAGAGTTGTCTACGAAGGGGAGCGTTTTGTAAAAGTTGTAGGTAAAAGAACTGCCAGAATTAGTCCCCAAGCAGTAAGAAGATTAGTTGCAGAATTTAATAAAGTAAACTATTTTTCATTAGCAAATAGCTACCAAGGCGGAAGGACAGATGCGCCTTCTGCAATTACTTCTTTAACTATCGGTAAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 56768-56052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000014.1 Nostoc sp. FACHB-87 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================= ================== 56767 36 100.0 36 .................................... CTTTAGCACCCATTCTCGCCTAGCATCATCCTCTTT 56695 36 100.0 36 .................................... CGTATTCTTTGCGCTTTCTTTCCCACGATCCATTAC 56623 36 100.0 35 .................................... ATAGTTTCGCTTTAGTTCATGAGTTTTCCCTTGTC 56552 36 100.0 36 .................................... TTTGACTGCCGCTTTTTTACCGCAAAAACCATCGAG 56480 36 100.0 35 .................................... AGGAAGAAGCTCTTCTAGATCGTGCAATAAACTGA 56409 36 100.0 36 .................................... ATCACTAACATGCGATCGCAGTTCAAACTACAAACA 56337 36 100.0 39 .................................... GTCTCTTTCTATTGTCATTCCTCTGACATCTGATGATTC 56262 36 100.0 37 .................................... GATCTACAATAAGCTCAGATCAGGAGTGCTTAATAAT 56189 36 97.2 65 .......................G............ TTTCACGGTCTGAAAGTTGAACACTTGTAAGTGCTGAAGGGCAGATGGGAACAACATAACCCTAC 56088 36 83.3 0 ...C........A.......GA..........A..T | T [56083] ========== ====== ====== ====== ==================================== ================================================================= ================== 10 36 98.0 40 CTGACTAAACCTTTGATGCCATTAGGCGTTGATCAC # Left flank : CATGAACGCGAAGGTCGTTGGTGGTGGGAAGAGTCTACTGCTAAAGAGTGTGGTCTACACTTAGGGAATTTACAAAAATAGGACTTACGCACCAAAATTATCTGTGAAAAATGGGTATAGGGTGTAAGGTTTTTGGATACATACACTCCTATACCCCTACACCAATAACTAGCTACCCAACTTTTTAGCCTTTCATCACTATATTCACAATTCACATCTTGCAGCTGTTTTGCATGGATCTACGACTGTGCCTTTCAAAAACCAATCAAAAAATCATATAACTGTTGTCAGTGCTGACTTCCAAGGTTTTCACATCACTTGAAGGTGCTTGCATTTTATTTTAAGAGCTTGAAATCTAGATGATACAAGGTTTCCAAGATTAGCATCTGTTCAAAAAAATGAGACTTAGGTAAAAATTTGTTTTCTGTATTGCTCCTGGGTGCTAGGTGCTTGTAATATCAAATCTCAGGGCAGACAGGATATGGATTTCCGAGTGCGCT # Right flank : AGCCGTAAGAATAACGTGAGTTCGATGAACCTCACCCCAACCCCTCTCCGAAGCGGAGAGGGGCTTAAAGATAAACGCAAAATTAAGCATTTAAAGCCTCTCTTCTGCAAGGAGAGAGGTTTGGAGAGGGGTTTTTTCAATCCGTCTAACTCAGATTAAAAATAACTTGACACAAAGCTATAATTTTGTTATGACTCTATTATTGCTATGTTTCAAGGTCTAAAAAGCAAGCGAAACTACAACTTAATAATCGCTCGAAGTACTACGTCTTGTACGTTCTTAATCACTACCTCAGATACCGCAAGGTTTTGAACATATTAAATATTTAAAGTTTGTTATCTAGGGAGCGTCTTAAAATGATTGCATCTGTAGGCTTTTTTGCATCCCAAAATGCGGGTAGTGAGCTTGAGCCTTTTGTTGAACTACGCTTTCCAGTGCGGGGTAACTATGCACCTGCTGACCAGAATTATGCTCTCTTTGCAGCGTGTGTTCACGTTATT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGACTAAACCTTTGATGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 24537-25943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000021.1 Nostoc sp. FACHB-87 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 24537 37 100.0 34 ..................................... CTTTATATGTTTCAAATGGTGACATATATGTAGG 24608 37 100.0 35 ..................................... CTTATATTAAAGAAAATGTATCTTATAAATTTGAT 24680 37 100.0 35 ..................................... AAGTAAAAAATCACGTAAGGCATCACTAAATAGAA 24752 37 100.0 33 ..................................... TCGATTGACTCTGCTGTTTAAATCTTCTGATTC 24822 37 100.0 34 ..................................... CACTGTGCAAGCGTTCGCATTGGGCCAGTGCAGA 24893 37 100.0 34 ..................................... TCGCGCCGTGTTTTTTGGCGGCGACTCTAAATGG 24964 37 100.0 35 ..................................... GCAAGGAAACTAAACATATCGATTAGAACGGTCGA 25036 37 100.0 36 ..................................... CATTACCTTTTAAAATAGAATCCTTGCCGCGAGATT 25109 37 100.0 37 ..................................... TTGCCGTAAATATCCTCATTGGATAATATCTGAGAAG 25183 37 100.0 33 ..................................... CATCCACACTGGGGATGCGTAAGCCTGCCACAA 25253 37 100.0 33 ..................................... AGACCAGTATACGTTACTTGGTTGCAAGGGATT 25323 37 100.0 41 ..................................... AGTGATCGTAGGCACATCAGTAGGCAGGGAATCGTATTTGG 25401 37 100.0 33 ..................................... ATTGGGAATCTGATAATGAATGGCGTATACCAA 25471 37 100.0 31 ..................................... GACTACCGCTATGGTTCACTAGGCGGGAAAG 25539 37 100.0 35 ..................................... GTTTTACCCAGACAACAATATCATCCCAGTGGCGT 25611 37 100.0 34 ..................................... ATTTCTTCCAGATACTTGACGAGTTTCTGCTTGG 25682 37 100.0 38 ..................................... GTGCTGCGCGGTTGATTTGGACTCAAACCGCGACCCCT 25757 37 100.0 42 ..................................... ATCAACTTATCGTACTGGCGCTGGGCTTCAGTCAACAACTGA 25836 37 100.0 34 ..................................... ATAACAAAACCTGTACTATCCTCTAGACAGTAAA 25907 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 35 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CATTATTAATGTATGATATGCTGACGCGGATTCAAAACTCCACATTACCAGGAAGACCGCGTTTAGGTTTGCGCCAAGTAAAAATTACCGTCGGTGAACCAATTTCTGTTACCGAACGCTGGGAAAAGTCCCAAAACAACCGTCAAGCAGCCAGACAAGCAGCCAGTAATTTAACCAAAGACTTGCAAACAGCATTAGAAAATTTGATTAACTAGTACAACAAGGCAAAAGGAAAAAGGCAAAAGTTAAAAGTAAGAACTGAATTTCCCCAAATGCGCGAATGGATAGGTGTAAAAAATTAGGGTTTCACCAAAATGGCTGTATTCCTTTCAGCATCAGGTTTTGCCGAAAAAAATAAATTAAAATCATCCGCGCACCTTATACAGTATAGGTTTCAGAGATTCAGTGTCAATCAATTGACATTATCGGGTGTTATAATCAACCCATCCGCGAAACTGAACCTTGAAAACTTCATAGCACAAGACTTTCTGCCTCCCGCT # Right flank : CTTTATTCACAGTTATAGCAATTTGAAAGAAGAATGCGACAGATATAAATCAGAAAAGTCTTACTGGAGCTAAATTTCTTAATGGCGAATTGCGAATTACGAATTGGTATTACTTCTATACATTGCATTGTTGATGTACAGATAATAAAGTACATTCCCAAACTAAACGCGGTTGGGCGTAAACTAAAAGTGCCTTGCGTGCCTGTTCTAGCTGATTAATAACTCCTGGTTGATGCCACTTTTGCCAATAAGAATGTTGTAGGTAATCAATTAACCATAGTTGTGATTCTGTATCTAAATCTTTGTCAATTGTTTTAGCTAGTTCTAAAGCATGGCGGGCAGATTTTGGGGCGGCGGTGAGGTGTGAGAGTAACTCAGAGGGGATAACTTGTAATTGTTCATAACAAGCGATCGCATTTCCCGGACTGCCAGCCGCTATACTCAACACAGCCGGATGTTGCAAAATTTCTTGATGATTTGTTTGCTGCAATACTTGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 93135-94266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000027.1 Nostoc sp. FACHB-87 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 93135 37 100.0 38 ..................................... ATCAAATTAAAGGGGATGAGGTGGAGCTTTGCATCCTT 93210 37 100.0 34 ..................................... GGAACAGGGAGCTAGACCCAGCCCTCAACACTGG 93281 37 100.0 35 ..................................... GTGCAGATTTTAAACAGCCTGACCAGTATGACGCA 93353 37 100.0 34 ..................................... CTGGAGTCATCCGCTCAATGCCAGCATTGATTAA 93424 37 100.0 34 ..................................... GAGGCAGGAACTCCGCAACGGATCAACCGATGAG 93495 37 100.0 37 ..................................... TTTGTGTTGTGGGTAGTACATCTTGGCTGTTATCTCA 93569 37 100.0 37 ..................................... TTTGTGTTGTGGGTAGTACATCTTGGCTGTTATCTCA 93643 37 100.0 33 ..................................... GCCGCATAGCATCCACTTACCAGCGACATTTAG 93713 37 100.0 34 ..................................... CATCTTGAGAGCGATCGCCTTAAGTTTGCGAATC 93784 37 100.0 35 ..................................... AGGCACTCAGGCAGTACCAATCTGGCTGCAATGAG 93856 37 100.0 34 ..................................... TGATTGCTGCATTAATTGCCAAAATACCGACCAC 93927 37 100.0 40 ..................................... CATGTCTACCAATAAAATAGCTTTACATAATCTAGTTAAA 94004 37 100.0 36 ..................................... CTCACCATCCCCGATAAGCTTTGATAGTTCCTCTAC 94077 37 100.0 38 ..................................... GGACAGCAGGAGCCGGAAGATACTAGATTATTTCTTGA 94152 37 100.0 41 ..................................... TGATTCATCAAGAGTAATGGGTAAAAGGTCAATCAATCGGT 94230 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 100.0 36 GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : TTTCCATCTGTAAGTTGAATAATGGTATCAGGTGTGGCAACCTTGAGGGCTTGGCTAATGGTTTTAAATGGCGCTTGCTGGCTACCAGGGTTGGTACTATTGCCAGTTAAAGGATTTACGTAAAATTTTTGAGGCATATTTATACCGCTAAAACATAGTCATACTATTAGCTCTAACTGGTAAAATGGCTAGTTATTGCTAAAATTTGCAACATTGACTACCAAATTTAACGGCTAAATTCCTGAAATTCCCAGATAGACAAACTTACCCCAAACACGCGGATAGGTAGGTGTACAAAATCGTCTTTGAGGAATAACGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAATTTAATTAAAATTATCCGCGCACCTTATACAGCCTGGGTTTCAGCATTTTCATGTAAATCAACTGACATTTCATCATGTTAGAATTATGCCATCCGCGAAACTGCACCTTGAAAACTAAATACAGCAAGCTTTTCCGGCTTCCGCA # Right flank : CCTTGTATTACTTGCTTGCTGTTGCCCACAAGGATGTTTCTTGTTTCGCGCAAAGGCGCAAAGACGCAAAGAATCAATATTTACTCTCTGCTAAAAACCTTAATTCATCCCGCAAATAAGCAACGCTCAAAAATTAACTATTTCACATGAACCGGAAACACACCCAAAGCAATTAATCTAGCGGGTAAATCGCGCAAAATTGGTAAGCGTAACAATGCTGGCGGTTGAAAAGTCTGATTAGCAGACAACACAGGTGCAAATACTCGCTTTTGAATAAATGTCTGAAATGCTTGAATAATGCGTGTCGGTAACTCTCGCTGACGCTGGACTTTGGCTAAGTCACTCAGCTTGACTTGGTGATTTTGCAGAGGTTGACTGAGAACATTAGCGGCTACGACTGCATCTTGAATGGCGTAGTTAATCCCCACACCGCCAACGGGAGACATAATATGAGCAGCATCACCAATGAGTAACAACCCTGGAAGATACCACTGTTTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 336262-337097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000002.1 Nostoc sp. FACHB-87 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 336262 34 91.2 39 A...T.........C................... CCAGTTGCTATGATCAGTGCTTACGGCATTATCGTGGAT 336335 34 100.0 41 .................................. CACCAAGCCTTTTCAGCATTCCAAAGCGGAAGATTGATAGG 336410 34 100.0 40 .................................. CAAAAGGGTATATTAAAACCCACCGCCCACCTAATTCACT 336484 34 100.0 37 .................................. CCTTTGTTATCAGCAAACGCGAGTGACCACGCGATCA 336555 34 100.0 41 .................................. CTGAATTAATAATCAGACAATTGTACGTCACCCAAGGCGGA 336630 34 100.0 41 .................................. CCATTGTAGACGATCAATTGGTTACTGTCTTTCCGATCAAA 336705 34 100.0 36 .................................. CACCTTTGGAAGATATTCGCAGGGAAGTTTTACAAA 336775 34 100.0 39 .................................. CTTTCAGAGCGGAAGACTTATAGGTGGGGGAATATCCCT 336848 34 100.0 37 .................................. CATCTTGGGGCATTCTTTGAAAATACGGCACAATATG 336919 34 100.0 38 .................................. CAATACCAAAGGCCTTTAGATCCTTGCTATTCTTTAGA 336991 34 100.0 39 .................................. CACTTTCTGCAGATCAAATTAATTTGTTCAATGTAATGG 337064 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 12 34 99.3 39 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : TTATATGGTGGCTGCAAACCTAAAACAATATCTTCTTTTTGTACTCCCATCTCTAATAGTTCTTGTGCTAAATCCACATCTGTCATATTCTGCTGAATCCAGATTTTATCATTTTTAATATCAAAATGAATAACAGTGTGATACACACGACTTAAACCATTCCAACCTATACGCATCAATTGATAGTGGTCGTGCATTGTATCAAATATTAATTCGTTTTCAATCTCTTCACGTTGAGGTTTATACTTACTGTGTTTTGCTAATATTTCTTGGATAGATTGGCGGTATTGCTCTAGTTTGTCCATCTCACAATCACTTCCATAATTGGATCGTATATTATTAGTTTTAGTTGATGTCGCCGCACGGCAATTTTAGCAAGTTTAGTCTGAAAAAAGGTTTCATAAGCATCAACTGGAACTGCTAAATATAACTGACGTTCTGGTTCGTTTTCTTCCAGTGCAATTTGATTCGCATTATTACCCAATCCAGTAATTGATGAT # Right flank : ACACTACCCTTTTGGAACACTTGCTACAACTGGGTTTGAAAGTGCCATTTTCGCGGGGGGTCTGATTTTACTGTCAATAAGCATACTTTATTGACAATTAGACACCATCACAGACACCTCAAAGCCTTACTGAGTAAGTGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTCAAGCATTGCCTTACCCCCGCGAAAAATTTGCGTGTGAAAAGTAAAAATCAAGACTTTAACTTTCACCAGGAAACGCAATATTAAGTTTTCAAGGTTCTGCTTTCTTGGCAAAGAGTATACCAAACTACTCCTCAGTTTTTAAAGCGCGTCTTGCCAACTTGACATAAGTCTTCACCGTTTCATAAGGCATCTCTAAATCTTCTGCCACTACCTGCAACGACTCTCCCATTTCCCGCCTTGCTAAAATTGTCGCCCATTTTGAGGCTATTTCATCTGCTCGTTCTCCACCTGTTCGTTTGCGTCGTGCTTTAAATATCTGTGTTAAAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 342323-343378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000002.1 Nostoc sp. FACHB-87 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 342323 35 100.0 38 ................................... CTCTGATTGTAGCCACAGCAATGCCTGGGCTGGAAATA 342396 35 100.0 39 ................................... AAAAAGATGAAAGCTCAAAAATTGGCGTTGATTGGGATA 342470 35 100.0 40 ................................... AAAGCATAGAAGAACAAATACAATCAATTCTCATGGAGAT 342545 35 100.0 39 ................................... AGTTTTCTGGTGTGAACTTTGACCGTGACTATCCAACTG 342619 35 100.0 40 ................................... CGTATATATTAGCAATGGGAAGTACGAGGAAGCGAAAAAT 342694 35 100.0 36 ................................... TTTTGAAGACAAAAATTGGAGCAAATTAGTAGAAAA 342765 35 100.0 36 ................................... AAGACAGTAAGCGGGTTTTTGTTCCGTGCAGTACTG 342836 35 100.0 35 ................................... GTTTTTTTGGACAACAAACGCTCGTTACCTACCAG 342906 35 100.0 38 ................................... ACTTTGTCTGGAATGGTTCAACTCCCCTGAAACCCAAG 342979 35 100.0 38 ................................... AAAATAAAAGAAGAAATGTTGGCAAAGCTGCCAGCAAG 343052 35 100.0 39 ................................... ATCAGCATCAGCGAGAACGGAGAGAAGAGTTGGGTTGAG 343126 35 100.0 37 ................................... ATGAATATATCTGGTCTACGCATCGAACATGGAATGG 343198 35 100.0 36 ................................... AACTTTTCAGCGGGCTGGAAAGATGCAACTCAAGTC 343269 35 100.0 40 ................................... TCTTTGTCTGCCACATTGTTACTTAAGAAGGGCGGAGAAC 343344 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CTTTGTGTAATTAATTATGTTTAACTACTTAGTATCCCAGACTTAAGCATATCTAAAATAATAAAGTGATTATTTATACTTTTTGTTGATTTAGCCAAGCTTCGAGTTCAGCCACTTCTGAGAAATTTAACAACTCTTCTCCCCATCCAGGGGTAAAAGCACAGTCACAGGTAAAATAGATGTACGCCAAGCCTCCATCCCCAAACCCCACAAACCACCATGAAACAAATTACCCTTGCAGAACTTCCCGAAACTGTCCAAAACCTAATTAACCAAGCTCAAAAAACAGGCGAACCCCTCACTATCATCCAAAATGGTGTCCCCTTCGCCATCATATCCCCCATTCAGAAAAAATCACTCCTGCAAACACTTTCTACCCTTGAACCATTGGACGAAGACTTTGCCGACGTGGACGAAGGATTATTGCCCTTAGAGGGTGTTTGAAAAAAGGAATTAAAACTCAATGAGTTTTTGCAAATTTTAGGAACCATCGGCGTAAA # Right flank : CCCTACCTATTTAGAAACCTTATGCAGAAAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTACTTGTCAATAAGCTACATTTATTGAGAATTTAGTCCTAGTAGACCCGTCTCAAAAGCTTATTCAGACAGCTTTTCGCGGGGGTCAACGCAAGAATAAGGGTTGTACGGATCACCTGACCCCCGCGAAAAACTTACGTACACAAAGTAAAAACAAGTACTTTGAGATTCACTTGGAAACGTTAGATTAAGTTTTCAAGGTTCTGTTTGTTATTTTGGATAGTATCACAAAGTACTCGCACTTTTTACAGCATCAAACGCAAACTTAACATAAGTTTTCTCTACTACCACCCCGATTATTAAAGTTAAATGTGGAACAGCTTATTTCTGCCAAATCATTGGGCGATAAACTTCTACCTCCCCTTTCAAGCATGAAATATACTCTCGCACTTGCAACTCAAGAGCGCGACGATATGCTACTTTTTGTCCAGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 348330-347711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000002.1 Nostoc sp. FACHB-87 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 348329 35 97.1 39 A.................................. ACTAATAATATTTCAAAGAACAGGTGTAATTCTACGCAA T [348324] 348254 35 100.0 37 ................................... TGCTCGCACAGGTTTTGGAGGCGAAAGCGGAAGCATT 348182 35 100.0 37 ................................... CAGCGCCAGCGCCAATCCCAACCCAGCCGCAATTGCG 348110 35 100.0 40 ................................... TGTTGACTGGGATAAAGGAATTGACCAGTGGCTGCTTCCT 348035 35 100.0 38 ................................... GAAAAAAAAAGCCGAAGAAAGGGCAGTTTATTGGGAAT 347962 35 100.0 37 ................................... AGCTGTCTGATATTGTGGTGCCAATCCACAGGAAATA 347890 35 100.0 38 ................................... TTGCGGTATAGTCGGAAATTTTATGCAGGTTCCGTACT 347817 35 100.0 37 ................................... TGGTACGATGTACATTTTCTCGTTTTTTGGAGATTAA 347745 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 99.7 38 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Left flank : GCTCTCGATATATCTCTGCTAGATTATTCAAATTAGTCGCAATTTGAAAATGTTCTTGACCAAATATGTTTTGCCATAATTCTAGGGCTGATAAAAATAGCTTTTCTGCTTCTACATAATTACCTTGGGAATAGTAAAAGGCGGCGAGATTATTTAAAGATTGGGCAACATCAGGATGTTCTGAACCTAGAAGATTTTTTCTGAGGGTTAAGGCTTGCAAGTATAACGGTTGGGCTAATAAGTAATGTCCTTGCATCCGATATAATTCGGCGAGGTTATTTAAGCTATCACAATATTCAGGATTTTCTGTTAGCTGTTGATGTTTGCCTAGATTTACAGCTTGCTGGGCAACTATTAGAGCTTGTTCTAGGTTTCCTTTTCCTGCTAATTCGACAACTTGTAAGTTAAGTTGATTGAGTTGTTTTATAAGTTTTTTCATCTGCTAGTTCCAGATGTTTATATGTTTTTTTCGCTTTTATTAATTACTTATTTTATCTAAA # Right flank : CCTACCCTTTTAGAAGCCTTAGCCAGAGAGGGTTAGAGATAGGCATTTCTGAGGGGGGTCTAATTTACCTGTCAATAAACACATATTATTGAGAATAGCAGACTATTAGACTATCCTCAAAAGCTTATACAGTAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCATTGCCTGACCCCCGCAGGTAAACTTATGTAAAGAAAGTCAAAATCAATACTTCAAGATTCAGTTGGAAACTTGATATTAAATTTTCAAGGTTCTGTGCTTTTAAAGGGCAGTATAACAAAATACTTTAAATTTTGAAAGCTTCAAACATTAACTTTTCTATCATGCAGTAATCAGATAATCTGTATGCCAAAGTTGATATTCTCCGTGTTTGGTCAGATATTCTAGTAACTCTGTCAAATGACGAGCCTCTAATTCTAAAACCTCATCATTATCTTGGGTTAACCAGTCTAATTGAGGTACTTCTTTGGTAATGATGGCGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 50133-50613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000035.1 Nostoc sp. FACHB-87 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 50133 37 100.0 38 ..................................... AAAAAAATGATAGATGATGGTAATCTATCTGATGAAAA 50208 37 100.0 35 ..................................... CAAGCTTTAGCCTTGCAAAGTTGTCTCCAAAATCA 50280 37 100.0 35 ..................................... TAGCAAAAGTAACTCTCATTTTGTTCTCCGCTTTT 50352 37 100.0 34 ..................................... GTACGAGTGCAGTTTATACAATGGTGAACTTGTC 50423 37 100.0 43 ..................................... GCGATCGCGGAGTGGGAGCCTTTGCTCGCTGAGGGGGCTTGAA 50503 37 100.0 34 ..................................... TAGTGACTCGGAATGATGCCAATTATCGCCAAGT 50574 37 91.9 0 ................................T..TT | T,C,A [50602,50605,50607] ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 98.8 37 ATTGCAATTTCTCTTAATCCCTATCAGGGATTGAAAC # Left flank : TCTAAACCCAAACCCACAATAAGCGCGATGTCTGACGATCAGCCGCGAAGCGCGTCTACGCGGTTGATTGTACTATTTGAATGACGCGGCTCTCATGAACGCCAACGCACAGAATCACGTTGCTCTATAGGCTATCTTGGTACGGTTGAGAAAGATCGGTCTTAACGGGTGTTGAAGCGATCGCACCAATGCCAGTTTAAAAAGCATCAGTTATCTTGTGCGGTTATAATGCCAAGTGAACATCACCCAAACACAACAAAATTTTTCGGCTCAATGCGCGGATGGGTAGGTGTACAAAATTAGGTTTTCCCAAAAATCGCTGTGTTCTTCTCGGTGCAAGCTTTTGAGCTTGTGATAGAGCAAAATAGTCCGCGCCTCTTTTCCTGTCTGCATTCCAGCATTTTTGTGTCAGTCAATTGCAATTTAGGAGTGTTACAATTGAGCCACTGGCGGAATCGAACCTTGAAAACCGAATATACATTAGCTTTCCGACTCCCGCA # Right flank : TCTCTAGCTAATTCCTACACTATTCAACGCAAATCCGGCGAGTAGTATTCATTAATTTTACCGCATAACAGCATAGCAATTTGTTTGGCTTGCAAGTACAACAGTTCTTCATAAGAGCATTTGATTTTTGTCCCTGGATAGGTAAATTGCTCGTTCATCTTTTGCATATATGAGTATTGAAGCGCATGAACTACAGAAAGCGGTAATCCCGATTTATCTCCATGTCCATCAAAATCTTCCCTAACAATCACTTGCTTATTTAAAACTCTGATCACCACTAACTCACTGTAGAGCTTAAACTCATTCGCTAAATCGGCAATCAAGGCTTGTTGTTGATGACGATTCGTATGCCAAAATCCGATTGTGGGGTTTAGTCCGGTATTTTCAACTGCTATTTTTACCGATTCTTCTAGCAATCTATAGCTAAAATCTAACATCCTGCTGACAACTGAATTTGGTTCATGGCATTTTAAACCCCACTCATGTTTGAGCAAATGCCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 2572-3262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000004.1 Nostoc sp. FACHB-87 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2572 37 100.0 32 ..................................... CTGTAATGTGGTGTTTTGCTCTGAGTATGATT 2641 37 100.0 37 ..................................... ATTTTTATTTATTACGAAATGACGAATGGATAAAATT 2715 37 100.0 36 ..................................... TTTTTACCAATGATTCACCAACAATAGCAAATCCAT 2788 37 100.0 34 ..................................... TGGTTTCTACCGCAGGCTTGACCCTGCATTGCTT 2859 37 100.0 34 ..................................... TTCCTTAATAGTTCTATTGTTGTATAAACAATGG 2930 37 100.0 35 ..................................... GATTATTTGTGCAATTTTGGCATACACAAGCTATC 3002 37 100.0 34 ..................................... TGGGTGTTTAGCAGTCACCCACCATTTTTTGTGC 3073 37 100.0 38 ..................................... AGATTAAAACAAGAACCTGACGCTAAATACAATACTGT 3148 37 100.0 36 ..................................... GTGTTGACTAAGCTTTTTTAGCCTTTGCCCGTTTAA 3221 37 83.8 0 G.....................G...ATC.......A | CTA,GT [3245,3256] ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.4 35 ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAAATCCCGCCTAGAATTAAAATCCCAGGCTCATAGCTATGGAATACATAGAAAAATTAACCGCAGATGGACGCAGATAAACGCTGATAAAATAGGTGTTTCTGAGGCAAGATTTAAAGCTATTAAAAATAAAAGTAGGTTGGGTGTAACGAAGTGAAACCCAACATGGATAAGCAATACAGCAATCCTACATAAATTACAAACATCGCGCTACCTTGTCTACCCTGTCCTCCTTGTCTACCTTGTCTCTGTTATGTTCCTAGCACCTAAAAATGCGCGGATGGGTGGGTGTAGAAAATCAAGCTTGAGACAAAATCCTTGTATGGTTTTCCACATAAGCTTTTCGAGAAAAATTAAATTAAAATCATCCGCGCACCTTACGCTGTCCAGGTTTCAGCGATTCACTATAAATCAACTGACATTTACTAGTGTTATAATCAACTCATCCGCGAAACTGAACATTGAAAACCAAATACAGACTGATTTTCCAGCCCCCGCC # Right flank : ATTTCTATATCTTTTTCTTCTTTCTTACCTTTGCGTCCTTTGCGTTCTTGGCGGTTCGTTTCCATATCTATGTTTTTCACGACTTATTTAGGATTGCTATAGGTGTTTAATGAGTGTATCTTTTTGGCAATCTAATTGTAACTTTAGTTCCCTTTTCTTCTTGACTAGATAAACTAATATTCCCACCATGTAACTCTACACAAGCTTTAGTAATTACTAAACCCAAACCTGTTCCTTGTATGGTGTCAACATTACTACCCCGACTAAAAGATTTAAACAGATTTTCTTGATCTACGAGAGGAATACCAATGCCTTCGTCTTGAATTTCGATAAATATTTCTGATTCTTTACCATTGAGATAAACGATAACATTACCACCATCAGGAGAATACTTGATGGCATTAGATAATAAGTTTAAAAATATTTGGCGCAAAAGTCCGCGATCGCCCCAAAAGTTTTGATAATTGCCTGTCACTTGTAAAATGATTTCATGGCGATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 716-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000042.1 Nostoc sp. FACHB-87 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 715 37 100.0 34 ..................................... AATTTAAGACGTTCCCCCATTTTACCAATATCGG 644 37 100.0 35 ..................................... CTACAGAGAGGCTTGAATGAAGAATTGATTGGTTG 572 37 100.0 41 ..................................... TGCGTGGGCTGAGATTTCGGCAGGCTCTCTACAAGATGTGG 494 37 100.0 37 ..................................... GGAATAATCGGGGCTGCCATCACCATCGGCATCAGAA 420 37 100.0 34 ..................................... AAATTTTCACAATAGGTAAACCAACTCATGGTAA 349 37 100.0 34 ..................................... AGAAGCGGAGTTAATTGGTGCGATCGCTCAAGCA 278 37 100.0 36 ..................................... AGACTAAAACTTCCATACAAGCAATTTAAACAAGAC 205 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTGGCAAAATCTGGTGGTAACGGGAGAATTTACAGCCTTAGAATTATGGCAAGCTTTAAGTAGTAATCCCGCAAAATGTTTGGGACAGGAATTAAGTACATTAACTGCTAATCAAAAAGCCGAGTTAACTTTGTTTGACCCTTCGCAAACCTGGAAAGTGGAAAGGAAAAATTTACAGACACTTTCGAGTAATACACCTTGGATGGGGCGAGAATTACAAGGTCGGGTGTTGCAAATTTGGTGTTAAATTAATCTTGGTAGTTTTGGCGATCGCGCGGATGGGTAGGTGTTCAAAAATAGCGGTTCGGGAAAATGGCTGTATTCCTTTCAGCACAAGCTTTTGCCAAAAAAATAAATTAAAATCATCCGCGCACCTTGCTATGTATAGATTCCAGCGTTTTTGTGTCAATCAATTTGCATTATGCTGTGTTATAATTTTTCCATCCGCGCAACTGAACCTTGAAAACTTTATAGGACAACGCTTTCTGGCTCCCGCT # Right flank : CATCTTAGAAGCATCTCTGAGGCTTGCTGAGGACTTCCAAGGTACAGCACTTGCGTCTGTTATGAGGTACAATAAATTAAAATATAAATACCTCTAAATGAAGTCATACTCTGTCGATCTTCGAGAAAAAATAGTTGCAGCACATCTTCAAAAAAACATTTCAATTAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 41678-43267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000046.1 Nostoc sp. FACHB-87 contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 41678 37 100.0 33 ..................................... ACGACTCATTAATTAACCTCACTTAATAAAACC 41748 37 100.0 37 ..................................... GGGTAGCTACCCATATATTAATCGGTATTTCACTAAG 41822 37 100.0 38 ..................................... ATCAAGCAATACTCTTCTAAAGTTTCATAGGGAGAGTT 41897 37 100.0 33 ..................................... TAATCGCAGGCGATCGCACCTTAACGGAGGAAA 41967 37 100.0 36 ..................................... AGTTCTTCGCTTAACATAAATCCTCGTCAGTGCCAG 42040 37 100.0 33 ..................................... GTCCATAATACTATTTAGTGGTGAGTTTTCTCT 42110 37 100.0 34 ..................................... AATACGAACACCAAACAGGATATGGATGACAGGA 42181 37 100.0 40 ..................................... TTCAAGAAGGAAATTATCAAGCAGAGGATGATTTACCTTG 42258 37 100.0 38 ..................................... TTATGTGATGCCATTATTTTCCTTTGATTATTAGCGAT 42333 37 100.0 35 ..................................... AAATCAGGATAAAACATTCTAAAACCTGTACCATT 42405 37 100.0 34 ..................................... AGTACACTCGTGAAAAATTCGCGCGAACCTTAAA 42476 37 100.0 43 ..................................... ATAAACAAAGTGCTGGAACACCCAGATGAGCAACTGCCGGAAT 42556 37 100.0 40 ..................................... GGGGGAGTGCGGCGGACAGGGTAGCGGCGGAAGCCTTTAA 42633 37 100.0 43 ..................................... CCGTCAAACAACAGAAAATAATATTCAGTGGAAAATTGCTCTA 42713 37 100.0 36 ..................................... GATAATCCCAATAACAGGGAGGATGCCAGCCAAGTT 42786 37 100.0 38 ..................................... GTTGTGCCAAACCACACATTCTTAAGAGGTAATTCAGG 42861 37 100.0 35 ..................................... TTTTACCTCAGATTATAAGTGTGTAAGTAGTGATT 42933 37 100.0 37 ..................................... CAGCAAAAATACCAGAAGTCCATCTGAAGCGTTGAGA 43007 37 100.0 42 ..................................... TCCTTAACGATACCTAAGATAGGGTCTTTGATTTCGACAGAT 43086 37 100.0 34 ..................................... CAGGCGTGGGGTAGTACCAGCGAACCGCCTTTTG 43157 37 100.0 37 ..................................... GTCTTGACCGCGATCGCAAAATACATCATCTTCAAAC 43231 37 89.2 0 .C.......T.......C..............A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 22 37 99.5 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : GATGCACTGTTTCTGTGGTGGCTTTTAAGATGTGATGCGTCATGAATAGAGGAATCAAGTTTGATTTCTCAATTTACTTGTGTATGCAGGGCGTAGGGAATAGAAAGTGGGGAGAAAATTATTTACAAAAATTTTTCTACTTACGCTTGACAGGTATACCGCCAACCCCAATGAAGTCATAAGTATTTTAATCCGCCAAATCTTGATGTAATATCTAGATCCCCGACTTTTTCAAAAAGTCGGGGATCTAAACAGCACGACAAAATTGGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTAAGCAAGAATGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAAATAATTAAAATTGTCCGCGCACCTTACATAGTGAAGGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAGAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGCAAGCTTTTCCGGCTCCCGCT # Right flank : CCATTGATCTACTCTGTATTTATTATATGGGTCGCCCGGGATTCGAACCCGGAACTAATCGGTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCGACCCTTTTGCTTTGTTTGCAACTTTGCCATCATAGCACAAACACCATTGGATTTGTAAAGGGGTTTTTAGAAAAAACTTGCCGTCAATCTAACAGATGCTTGATAGCTGGCTCCTGGCTCTACCACAGTCAAATTTTCGCCTGTGTTTAGAGAGTTGCGCGGCGCACTCCAAGGTTCCAAACAATAAAAGTCTTTGCCCTTGAGCGTCCAAAATACCACGATGGGATATTCATCGCCGTAATCTAAAGTCAATTTTAATTTACGACTGTTGTCTGTGACTGTAGCTGAATTAGCAGTTAGTTCCTTAAAGGCAACATCAATCTCATCCAAATTGAAATCAAAATTCCCACCAAAGAATTTTCTTTCCTTAGTTCTCTGGTCTTGATACTCACCAGCCGGAATCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 15516-15893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000045.1 Nostoc sp. FACHB-87 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 15516 36 100.0 32 .................................... CTTTTGAAAATCAGATGAACTGCCTCTCCAAA 15584 36 100.0 34 .................................... CGCAGGTAAAGCATCAAGAATCCGAGCCATAGAA 15654 36 100.0 30 .................................... CTCTAATGCTTTTTGGAATGCTCTATTAAA 15720 36 100.0 30 .................................... CTCTAATGCTTTTTGGAATGCTCTATTAAA 15786 36 100.0 36 .................................... AACCAGTTGACATTCTCGTCATTGGAGATTTTTTCC 15858 36 88.9 0 ...............T.....A........T.T... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 33 CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Left flank : CAAGTAACAGGACGTTCTTTCAACCCCATTGAAATTACTCTCAAGCAGCAGTTCCGCAAATAGATTAGCTAAATTTTTGTAAAATTACTGTTATATCTAGTAGTCTGCCAAGATAACTTTGCGTGGTGGCTGGCAGAGGGGCAGAGGGGCAGAGGAGAGAGAAGAGGCTTCGGGGCAGAGGGGCTTCGGGGCAGAGGGGAGAGTACCTTCATTCTCCCCTGCTCCCCTGCTCCCTTGCTCCCTTACAGGGTCTACACAGCAATATTGGGTTGGTGGACTACTAGGTTTGAGGCGTTTTCACAGAGTTTTTTATTGTTCATCGACGCATCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGATGCGTCGACTGCTTACAGGGCAAGGGTTTGAGGTATGTGTTTTGGTCAATTTTCCCTGATGATTTATAATGATTTTAGAGATGCGTCGATTTGGCGGCTGAAACTCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CTCAAAATTAGAAGCTTGAATTTTGTAGTTCTGATAACTAAAAAAGAGGTTAGATACTAATATATCTAACCTCTTTTGTTTATCTATTATTGATATTTTGATAAATCAAATATTTTCTTGTTGATTTAACCAAACTACTAAATCAGGCAGCGATGAAAATCTGAGGATAGCTCTGCCTAAAGCTTCTATAGCAATCCTACCCCAATTGTGAGAAAATACGTAGACAAAAATCCTTGTTTTATAAGCATTTGAGGCTTATTGAACTCTCATGTATCATTTAGGATTGCTATAGCTTTTCTTTATTTAAAACTTGAATTCGCTCAATAATTGACGAATCAATTTCACCAAATCGTTCATTTAGTAATAACAAACAGAATTTAATTTCACCCTTTTGTTCACCCTTCTGAAATATATGCTGATAAATTACTGACTCTTGCATAATCTCCTCTCGTAATAATTGAAGAATTAAACCTTGTTCATACTTTAACCCTGCTAAAATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 25256-26091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000045.1 Nostoc sp. FACHB-87 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 25256 37 100.0 41 ..................................... TTGACTTGACCGCATCTAGTACAGCAATAACATGATTAGAA 25334 37 100.0 34 ..................................... AGCAATAGAAAATAAGTTTGGTTGGCAGTGATCC 25405 37 100.0 36 ..................................... ACACAACGTATTAACTGAATATACACAAGCACTACG 25478 37 100.0 34 ..................................... TGTCCCCACTTGCCACCTGACTTTGCAGGAACAG 25549 37 100.0 34 ..................................... AGGATTTGCAAAGACAAAAAACAACATATAAAAC 25620 37 100.0 35 ..................................... TTTAATTTACCTAAAAACATCTTTTTGCTATTAAC 25692 37 100.0 34 ..................................... AAGTGGTGCATTTAGGTTGATTTGTATTTCCTGA 25763 37 100.0 35 ..................................... GATATTGACCAACGTGTTGATGATGCCTAGATTCA 25835 37 100.0 38 ..................................... TACTCATATCTGGATGACTGGCTATTTCATCCCACAAA 25910 37 97.3 36 .......T............................. TGTGTAAAGAGTGGTTAGAGAGTTTAGACATCCCCG 25983 37 100.0 35 ..................................... TTGCGGTTCCTGGTGAAACAACCTCGTGAGATACA 26055 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.5 36 GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAT # Left flank : AAATTAGCACATCAAACTTAACACACATACTTTCTGCCTTTTGTCTAGTCCTCCTATTGCTATCCTCTTCTCAAATCATCTCTTCAATTAGCTTTCAGCTTTTGTTAAGAAAGATGTGACTAATGGATAGCTTGGAAAGGGGGGATTTAGGGGGATCGAAATATGTACAACTTCACATTAAATTGGTATCAGGATGATAGCGATCGCTATTTTTATCTGTAATCTGACTGCACAGTTGACATACTCACTGGCGCGGATGAGTGGGTGTTTAAGAATTTGAGGCAATTTTTGTGGTTCAAAGGCTTATGTCGTATAGCTTTGAGGTGGATGGCTACAATATGGAGTTCCGCGCAATTCCTAGAAGCTTTGCCTGTTATGCTTTTGAGGCAATTTACAAAGGTGATGTCTTGACGAGCCAACGGCTAAAATGCTACTTTCTTTCTAGTCCCGCGCAAAGTGGCTTTAAAACCTTTGCAATATCAAGGTTTCAGAAGCCCGCA # Right flank : CATCATCTCTTTCCTGAGCGTGTTGTGTGGCTGCGCTTTACCGATTAACTCAAATCGGAATTATTGGAAACGCCTGGTAGACCACGATGGTCGGTGTAATGGAAGTCAAACTTTACCGATTAACTCAAATCGGAATAATTGAAAACACTTCTACTGGCTGTTGTGGCGATATATCTCGCCGAAAGTGTTTTGATTCCTCAAATCAGAATTTGAGCGGTTCTCAGTTGGATGAAGTACATTTCAACCCCACCCCCAACCCCTCCCCGCGTGCGGGGAGGTGTTGGGGGTGGGGTTCCGACTGTATTACAAGCAAGTAAGAACCGCTATCACCAAAACAGCAAAAAGAAACCCGACTTTATTTAAAGTCGGGTTTTTAATAGTGGAAATAACTTATCGGATCAAAATCATGCGGATTAAAATACTCATCACCTCATCTGGATTAGCAGTGGGTAAAAGTGGACTCCAGTCACCAGTGCTGGCGTAGCCAATAACGTGCAGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 16564-18219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000049.1 Nostoc sp. FACHB-87 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 16564 37 100.0 34 ..................................... CAGAGTTAGCAGAGAAGTATAAATGTAATTTAAA 16635 37 100.0 37 ..................................... TCAAGTACTAAAAGTACTTTATTCATTGCATACAATT 16709 37 100.0 37 ..................................... TGTAAATAACCCATATACATTAATTGAACAAGAATCT 16783 37 100.0 36 ..................................... TTTCTTTAAATTCTTCCGACCGTTTAATTCCTCTAC 16856 37 100.0 36 ..................................... AAAACTTAAATCTATTTCGGAAGCTGGATCAAAACT 16929 37 100.0 33 ..................................... CTTTGCCTATAAATATCAATGAAGTACCAGAAC 16999 37 100.0 42 ..................................... CTGCCTGGAATAAATCTAGTTGATACATAGCTTGCCAGTAAT 17078 37 100.0 37 ..................................... AGATTCTACGGTGCTAATTACGACAAATGTGACCCTG 17152 37 100.0 38 ..................................... TTAGGCCCCAAGCTTCAAAAATTAATACAGGGTCATGA 17227 37 100.0 38 ..................................... GAGTATTAAAAACTGATTTCTCAAATTTTAAAAAAGAA 17302 37 100.0 37 ..................................... TCAGCCATTGCATCTTTTTGCAAGGATTGAGCGTTTC 17376 37 100.0 34 ..................................... TGCTGAGGTGTTTGAGTAATGAATAACTACTTTG 17447 37 100.0 35 ..................................... TACGGTAACCGCCCAAGGACAATCTACTGATTCGA 17519 37 100.0 33 ..................................... GGTGCTGTTGTGTGTTGTGTTGCGGCGCTTTAG 17589 37 100.0 44 ..................................... TGGTCATTGTTGTTGATTCCATATTATGGTTTACATTTCCTTGT 17670 37 100.0 37 ..................................... TCGCAGACTATTTGTCTCAATATCACTCTGCTGGAGA 17744 37 100.0 34 ..................................... CTTTGGGGATGGCGCAACTTCCTCCTGTTTAAAC 17815 37 100.0 34 ..................................... GTGGATTATCGTTACACCGATATTTACAGGGAAT 17886 37 100.0 43 ..................................... ATATTAATAAGCTTGTTGTTGTTTAAGCTTAGTAATGCTTGAA 17966 37 100.0 34 ..................................... ACAAAGCTTAGACGCTCTTAAAAGACTTCTTGTG 18037 37 100.0 34 ..................................... TGATACCAGGGTTGGCAATAAACTTAGTTGGTAA 18108 37 100.0 38 ..................................... TGGTAATTCGCTGGCGCTGATGGATTTATTTCTTTTGA 18183 37 89.2 0 ...........................T.G..C...T | ========== ====== ====== ====== ===================================== ============================================ ================== 23 37 99.5 37 GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TAACAGGTTTAGCCAAACAAGTCACAACCATCGATGTGACAATTCCTGGTTCACCATCACAAGCTAAGAATTAATCATCTAGAAGTTATGCACAAAGATTGGCTGTGAAAATGGGTGTAAGGGTGTAAAAGGGTTTTGAACATCTACACCCTCACAAAGAAGTCAAAATTCAAAAGTCCGAGAATTTTTGACTTTTGACTTGATTTTTCCCCTTCACCCATTCTCAACAAATAACCTTTGTGCATAAGCTACAACCAAACAAAATTCTTCTCGATGCGCGGATGGGTAGGTGTACAAAATCTCGCTTTTGACAAAATAGCTAGATTCCTTGAAGTGCAAGCTTTTGCAGAAAAAATTCCTAAAAATCATCCGCGCACCTTACCCAGTCTAGGTTTCAGCCATTTTAGTTAACTCAACTGATATTTCCCCATGTTAAAATCAACCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGACTGCCTTTCCAGTCCCCGCA # Right flank : TTTGATGTAAAAGGGTATTTAGGGGGGATCTAAAATGTCTTGCTACCAAAGAGAGGACTTTTAAAACATCCTCTCAAATATCAATAAATCCCCCGCTAGAAAAGATAGATTATTTTAAACTTAAAGAATCATGTTGTGATAGTAATTTTTCCACCTTTGCCTCATCAATTCTTGCTGTTAATCTTTTAGCTTCGTGCAAATCTCTGGTTGTTTTTGCCAAGGTAAAAGTCGAACCAACAGAAAAAGCTAAACCCATACCCATAAAACCTTTTACCCAGTTATCTACAGGCAAATTCACAATCCCAAAGCTAGTCATAGAAACAGAAAGCATAAAAGCAGCCCATGTTTGAATAATCCAAGCTGTACTATCTTTTTGTGAACTTAGTTGCTGCATATTTCCGCCCGATAAATTCAAAATTTTCTAGCAATAGCAAAGGTAATTAGGATATTTGGAAATGAGACAAACTCGACAGAAAATAACTTTTAATTCTGTCACCTGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 161-634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRX010000053.1 Nostoc sp. FACHB-87 contig53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 161 37 100.0 35 ..................................... ACACTTTTATCTGTTTTATACAGCACAGCAATAAA 233 37 100.0 35 ..................................... AAAATGTACTAGACGCGATCGCTATTCAAAGAGGG 305 37 100.0 34 ..................................... ATAAACCTTGAGAGCCATGAACTACTGAATGGAC 376 37 100.0 35 ..................................... TACAGGGTATACCTGGTAGAGATGGTAGACCGGGA 448 37 100.0 40 ..................................... CAGGTAGTTACAATTTCGATAAAGCTAAAAATATTACAGA 525 37 100.0 36 ..................................... TTACCATTAGGAACTTCGCCATCTGCACTTTCTGTC 598 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.6 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TGGTCACAACTTAAATCTTTTTTACGCAATTTTGCTCCAACTACAACAGAAATGGTTGATAAACTAATCTCAGTTGCACTCGACTTAATAAATCCTCAACATTTAAGAAACTGGTTTGCTAGTTGCTGCTACTGTACCTCATAACAGCCGTAGGTGCTGTA # Right flank : TATTAACCTATATAATCCACTGATTAATCTTGGAATTGCAATTTCAACTAATCCCTAAAACTGCTCATTCTTACCTAACAGGACTTACGTAATACCAGTTCTGCATGAAGATGCACAGAATCTTAAGAAACGAACCGCCAAGAGCGCCAAGAGCGCCAAGAATCTAGAGTTTCATTTAGTGCAGCTTCATATTAAATTGGTAAGCTAATCAGCATTTAAGCTGCACTATTGAAATTGTACATAAATGACTTAAACTCTCTCCTCTGCCCCTCTGCTCCCCTGCGGTCTAAACTGCAAACTAAGTGCTTAATAGCTTATAAGTGTCACGATTGGTAGTTGGTGCGTGACGCTATAAATTTGATGACTACGTTTAAATCTTCTCGTTGCGTCACACACCCTACAGAAAAAATATGCCAGTTACTTCTTACTCCTTATTTCGCTTGCGCCTCAAGTTGTCTCACCACGGTTAACGCCGAGTAACTCACGCCAGCCGTACCTTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //