Array 1 566398-565408 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDI01000004.1 Providencia rettgeri strain AMW697_S1 18_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 566397 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 566337 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 566277 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 566217 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 566157 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 566097 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 566037 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 565977 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 565917 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 565857 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 565797 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 565737 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 565677 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 565616 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 565556 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 565496 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 565436 28 89.3 0 ...T......A.........T....... | G [565410] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 576624-575035 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDI01000004.1 Providencia rettgeri strain AMW697_S1 18_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 576623 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 576563 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 576503 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 576443 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 576382 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 576322 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 576262 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 576202 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 576142 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 576082 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 576022 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 575962 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 575902 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 575842 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 575782 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 575722 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 575662 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575602 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575542 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 575482 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 575422 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 575362 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 575302 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 575242 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 575182 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 575122 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 575062 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //