Array 1 164127-160925 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNN01000044.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016006 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164126 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 164065 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 164004 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163943 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163882 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163821 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163760 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163699 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163638 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163577 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163516 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163455 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 163394 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 163333 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 163272 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 163211 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 163150 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 163089 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 163028 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162967 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162906 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162845 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162784 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162723 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162662 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCT 162601 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162540 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162479 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162418 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 162357 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 162296 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 162235 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 162174 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 162113 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 162052 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161991 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161930 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161869 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161808 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161747 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161686 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161625 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161564 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161503 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161442 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161381 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161320 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161259 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161198 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161137 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161076 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161015 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160954 29 93.1 0 A...........T................ | A [160927] ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182982-180634 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNN01000044.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016006 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182981 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182920 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182859 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182798 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182737 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182676 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182615 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 182554 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 182493 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 182432 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 182371 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 182310 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 182249 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 182188 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 182127 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 182066 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 182005 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181944 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181883 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181822 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181761 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181700 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181639 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181578 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181517 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181456 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 181394 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 181333 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 181272 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 181211 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 181150 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 181088 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 181027 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180966 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180905 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180844 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180783 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180722 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180661 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //